suba logo
AT5G62280.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 0.993
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF1442)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF1442); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1442 (InterPro:IPR009902); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1442) (TAIR:AT2G45360.1); Has 92 Blast hits to 92 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 92; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IWGKeggNOG:ENOG410YI2IEMBL:AB019235EMBL:AK228759
EMBL:BT010755EMBL:BT011787EMBL:CP002688EnsemblPlants:AT5G62280
EnsemblPlants:AT5G62280.1entrez:836349Gene3D:3.40.50.150GeneID:836349
Gramene:AT5G62280.1hmmpanther:PTHR33593hmmpanther:PTHR33593:SF3HOGENOM:HOG000006158
InterPro:IPR009902InterPro:IPR029063KEGG:ath:AT5G62280OMA:CANVADS
Pfam:PF07279PhylomeDB:Q9LVA8Proteomes:UP000006548RefSeq:NP_201034.1
STRING:3702.AT5G62280.1TAIR:AT5G62280UniGene:At.24047UniProt:Q9LVA8
Coordinates (TAIR10) chr5:+:25017165..25017985
Molecular Weight (calculated) 26011.10 Da
IEP (calculated) 7.24
GRAVY (calculated) -0.20
Length 236 amino acids
Sequence (TAIR10)
(BLAST)
001: MAFWSAENAT KAYLSTLKTD QRTKEPNVAE FISALAAGNS ARKIAVACAG AANADILVAL IAAANQTRGQ VVCVLRGIEE LIISQKMLEP SEIHQIQFVV
101: GESNDDTLIN NHFGEADFVL VDCNLENHQE IVGKILNHHE ENARTGGGSG VAVVVGYNAF SRGSWRFSDG RKTQFLPIGE GLLVTRVNDN QKMMMKNHHR
201: DQVMRKSRWV VKVDKCTGEE HVFRVRVPRG EAIIEA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)