suba logo
AT5G62220.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plasma membrane 0.989
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : glycosyltransferase 18
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
glycosyltransferase 18 (GT18); FUNCTIONS IN: catalytic activity; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Exostosin-like (InterPro:IPR004263); BEST Arabidopsis thaliana protein match is: Exostosin family protein (TAIR:AT2G20370.1); Has 691 Blast hits to 690 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 667; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).
Protein Annotations
EC:2.4.1.-eggNOG:ENOG410XTFHeggNOG:KOG1021EMBL:AB019235
EMBL:CP002688EMBL:KJ138630EnsemblPlants:AT5G62220EnsemblPlants:AT5G62220.1
entrez:836343GeneID:836343GO:GO:0005794GO:GO:0008378
GO:GO:0009969GO:GO:0016021Gramene:AT5G62220.1hmmpanther:PTHR11062
hmmpanther:PTHR11062:SF52InterPro:IPR004263iPTMnet:F4K6F1KEGG:ath:AT5G62220
OMA:ECEDAGSPaxDb:F4K6F1Pfam:PF03016ProteinModelPortal:F4K6F1
Proteomes:UP000006548RefSeq:NP_201028.1STRING:3702.AT5G62220.1TAIR:AT5G62220
tair10-symbols:ATGT18tair10-symbols:GT18UniGene:At.29063UniProt:F4K6F1
Coordinates (TAIR10) chr5:-:24988456..24990009
Molecular Weight (calculated) 59648.50 Da
IEP (calculated) 8.42
GRAVY (calculated) -0.42
Length 517 amino acids
Sequence (TAIR10)
(BLAST)
001: MLPVSNPSSP EHLLKKSRTP DSTTSIDRKN SFNSLHSVGN RSSYIAASRS HCTWLILSLL SLQLILFLTL RSIPFPHRHI PENFPSPAAV VTTTVTTTVI
101: SAASSNPPLS SSSSDERCDS GRVFVYDMPK IFNEVILQQC DNLNPWSSRC DALSNDGFGQ EATSLSNVIP KDLVQSWFWT DQFVTEIIFH NRILNHRCRT
201: LDPESATAFY IPFYAGLAVG QYLWSNYAAA DRDRHCKMMT QWVKNQPYWN RSNGWDHFIT MGRITWDFRR SKDEDWGSNC IYIPGMRNIT RLLIERNSWD
301: HFDVGVPYPT GFHPRSDSDV VNWQDFVRNR RRETLFCFAG APRAGIVNDF RGLLLRHCEE SRGKCRTVDC TVGKCSNGSS AILETFLGSD FCLQPRGDSF
401: TRRSIFDCML AGSIPVFFWR RSAYMQYQWF LPDKPDSYSV FIDRNEVTNG TTSIKEVLER YSKEDVRKMR ERVIDLIPNL VYAKSPNGLE TFKDAFDVAI
501: DGVFRRFKEQ EKWYKWR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)