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AT5G62200.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
vacuole 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:20843791 (2010): plasma membrane
  • PMID:17151019 (2007): plant-type vacuole
  • PMID:15215502 (2004): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Embryo-specific protein 3, (ATS3)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Embryo-specific protein 3, (ATS3); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, anchored to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipase/lipooxygenase, PLAT/LH2 (InterPro:IPR008976), Embryo-specific 3 (InterPro:IPR010417); BEST Arabidopsis thaliana protein match is: Embryo-specific protein 3, (ATS3) (TAIR:AT2G41475.1); Has 109 Blast hits to 109 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 109; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IYUAeggNOG:ENOG410YRBBEMBL:AK175131EMBL:AK176035EMBL:BT010895EMBL:CP002688EnsemblPlants:AT5G62200
EnsemblPlants:AT5G62200.1entrez:836341Gene3D:2.60.60.20GeneID:836341GO:GO:0005774GO:GO:0031225Gramene:AT5G62200.1
hmmpanther:PTHR31718hmmpanther:PTHR31718:SF8InterPro:IPR001024InterPro:IPR010417KEGG:ath:AT5G62200OMA:PHVAESFPfam:PF06232
Proteomes:UP000006548RefSeq:NP_201026.1STRING:3702.AT5G62200.1SUPFAM:SSF49723TAIR:AT5G62200UniGene:At.29064UniProt:Q6NPM5
Coordinates (TAIR10) chr5:-:24984463..24985674
Molecular Weight (calculated) 21072.00 Da
IEP (calculated) 7.20
GRAVY (calculated) 0.19
Length 190 amino acids
Sequence (TAIR10)
(BLAST)
001: MASVRLFFTL ISFVFIISTS VYESKVLDPP HVAESFNVSL IQKLGNTCAY TVIISTSCSS TRYTRDQISV AFGDGYGNQI YAPRLDDPST KTFEQCSSDT
101: FQINGPCTYQ ICYVYLYRSG PDGWIPNTVK IYSHGSKAVT FPYNTYVPES VWYGFNYCNS ASDSNVLAIG LRRSVIILLG FVVAGTTLLL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)