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AT5G62190.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27177187 (2016): nucleus
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:24134884 (2013): cytoskeleton microtubules
  • PMID:15496452 (2005): nucleus
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : DEAD box RNA helicase (PRH75)
Curator
Summary (TAIR10)
DEAD/DEAH box RNA helicase PRH75
Computational
Description (TAIR10)
PRH75; FUNCTIONS IN: DEAD/H-box RNA helicase binding, ATP-dependent helicase activity; INVOLVED IN: RNA metabolic process; LOCATED IN: nucleolus, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), GUCT (InterPro:IPR012562), RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEAD box RNA helicase (RH3) (TAIR:AT5G26742.2); Has 57587 Blast hits to 49572 proteins in 3210 species: Archae - 795; Bacteria - 24538; Metazoa - 10953; Fungi - 6002; Plants - 4052; Viruses - 90; Other Eukaryotes - 11157 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-175-MONOMERBioGrid:21584EC:3.6.4.13eggNOG:COG0513eggNOG:KOG0331EMBL:AB019235EMBL:AY039576
EMBL:AY056137EMBL:BT008581EMBL:CP002688EMBL:X99938EnsemblPlants:AT5G62190EnsemblPlants:AT5G62190.1entrez:836340
Gene3D:3.40.50.300GeneID:836340Genevisible:Q39189GO:GO:0003723GO:GO:0004004GO:GO:0005524GO:GO:0005634
GO:GO:0005730GO:GO:0010501GO:GO:0016070GO:GO:0017151Gramene:AT5G62190.1hmmpanther:PTHR24031hmmpanther:PTHR24031:SF330
HOGENOM:HOG000268805InParanoid:Q39189IntAct:Q39189InterPro:IPR000629InterPro:IPR001650InterPro:IPR011545InterPro:IPR012562
InterPro:IPR012677InterPro:IPR014001InterPro:IPR014014InterPro:IPR027417iPTMnet:Q39189KEGG:ath:AT5G62190KO:K16911
ncoils:CoilOMA:EHLAINCPaxDb:Q39189Pfam:PF00270Pfam:PF00271Pfam:PF08152Pfam:Q39189
Pfscan:PS51192Pfscan:PS51194Pfscan:PS51195PhylomeDB:Q39189PRIDE:Q39189PRO:PR:Q39189PROSITE:PS00039
PROSITE:PS51192PROSITE:PS51194PROSITE:PS51195ProteinModelPortal:Q39189Proteomes:UP000006548RefSeq:NP_201025.1scanprosite:PS00039
SMART:SM00487SMART:SM00490SMR:Q39189STRING:3702.AT5G62190.1SUPFAM:SSF52540SUPFAM:SSF54928TAIR:AT5G62190
tair10-symbols:PRH75UniGene:At.22598UniProt:Q39189
Coordinates (TAIR10) chr5:-:24980542..24983879
Molecular Weight (calculated) 72894.90 Da
IEP (calculated) 9.85
GRAVY (calculated) -0.41
Length 671 amino acids
Sequence (TAIR10)
(BLAST)
001: MPSLMLSDKK EEKKMKKKMA LDTPELDSKK GKKEQKLKLS DSDEEESEKK KSKKKDKKRK ASEEEDEVKS DSSSEKKKSS KKVKLGVEDV EVDNPNAVSK
101: FRISAPLREK LKANGIEALF PIQASTFDMV LDGADLVGRA RTGQGKTLAF VLPILESLVN GPAKSKRKMG YGRSPSVLVL LPTRELAKQV AADFDAYGGS
201: LGLSSCCLYG GDSYPVQEGK LKRGVDIVVG TPGRIKDHIE RQNLDFSYLQ FRVLDEADEM LRMGFVEDVE LILGKVEDST KVQTLLFSAT LPSWVKNISN
301: RFLKRDQKTI DLVGNDKMKA SNSVRHIAIP CNKAAMARLI PDIISCYSSG GQTIIFAETK VQVSELSGLL DGSRALHGEI PQSQREVTLA GFRNGKFATL
401: VATNVAARGL DINDVQLIIQ CEPPREVEAY IHRSGRTGRA GNTGVAVTLY DSRKSSVSRI EKEAGIKFEH LAAPQPDEIA RSGGMEAAEK VKQVCDSVVP
501: AFLEAAKELL ETSGLSAEVL LAKALAKTAG FTEIKKRSLL TSMENYVTLH LEAGKPIYSP SFVYGLLRRV LPDDKVEMIE GLSLTADKTG AVFDVKQSDL
601: DLFIAGAQKS AGSMSLEVVK VMPKLQEREP LPQKRFGGGG RGNRFGGGGG NRFGGGGGRG RGGSGGRGQR Y
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)