suba logo
AT5G62130.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
extracellular 0.927
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Per1-like family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Per1-like family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Per1-like (InterPro:IPR007217); BEST Arabidopsis thaliana protein match is: Per1-like family protein (TAIR:AT1G16560.3); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5237eggNOG:KOG2970EMBL:AF410293EMBL:AY093731EMBL:CP002688EnsemblPlants:AT5G62130EnsemblPlants:AT5G62130.1
entrez:836333ExpressionAtlas:Q94EI5GeneID:836333GO:GO:0016021Gramene:AT5G62130.1hmmpanther:PTHR13148hmmpanther:PTHR13148:SF2
HOGENOM:HOG000210016InterPro:IPR007217PANTHER:PTHR13148Pfam:PF04080Pfscan:PS51257PhylomeDB:Q94EI5Proteomes:UP000006548
RefSeq:NP_568951.1STRING:3702.AT5G62130.2TAIR:AT5G62130TMHMM:TMhelixUniGene:At.19891UniProt:Q94EI5
Coordinates (TAIR10) chr5:-:24950685..24952918
Molecular Weight (calculated) 39505.00 Da
IEP (calculated) 7.83
GRAVY (calculated) 0.11
Length 343 amino acids
Sequence (TAIR10)
(BLAST)
001: MARNLPWVLL IIVVSCLVST LEASEGDSDS LYKSCVDQCQ KTGCVGDTCF QHCKFSADGK AIDGPWYMQE PLYLRWKQWD CQSDCQYECM MTREEERKRN
101: GERPTKYFGK WPLKHVYGIQ EPVSVAFSAL DLAMQFQGWV SYFILVYYKL PLQPNRKTYY EYNGIVHIYA IIVMNSLFWS SICHSRDVEL TERLDYSSAT
201: VLAGFSLILA ILRSFSIQDQ SVKIMVTAPI LAVVATHILY LNFYNLDEGL HWKVIFGIGG IELVVWGLWA ALTSHPSKWK LRAFLISSIL TLCLRMFDFP
301: PYKGYIDAHA LWRGAGIPLS YLWWSFVCDD AVFRTTVNLK KSK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)