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AT5G62110.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Homeodomain-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Homeodomain-like superfamily protein; FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Homeodomain-related (InterPro:IPR012287); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5641eggNOG:KOG1601EMBL:CP002688EnsemblPlants:AT5G62110EnsemblPlants:AT5G62110.1entrez:836331Gene3D:1.10.10.60
GeneID:836331GO:GO:0003677Gramene:AT5G62110.1hmmpanther:PTHR31442hmmpanther:PTHR31442:SF6InterPro:IPR009057KEGG:ath:AT5G62110
OMA:AANSEMNPaxDb:F4K553PRIDE:F4K553ProteinModelPortal:F4K553Proteomes:UP000006548RefSeq:NP_201017.2STRING:3702.AT5G62110.1
TAIR:AT5G62110UniGene:At.55678UniProt:F4K553
Coordinates (TAIR10) chr5:-:24942339..24946081
Molecular Weight (calculated) 74753.50 Da
IEP (calculated) 3.89
GRAVY (calculated) -0.56
Length 673 amino acids
Sequence (TAIR10)
(BLAST)
001: MNVEGITRSQ IASHLQKYRK HMRRFKVNVT KADISKKAMK SNFESSSNIN PQCSYNYLGL TKENLFKSQI GDTLGQSSLL LNNNDSIHSM YDGSIYGLNE
101: PESNLSPMRE SVGFSRGVLP LNEESECAFE TSQMSQVPRR GQYGTPSDIS VDSNGNGHLG ESLGAMNWNL NNNDVRNYES STSRFSSPFS SFLHNKVQPH
201: HNLISQTDGL LSTSILDTSQ VPSFGQYGIP NDVVGMEPEF GTSYMHSNYN GINTDQVGNL VGLGRERVNV NGNVSLGQNL GSMNWNFDEN NMSNHGSSTS
301: RFSSPFSSFE DQSLSHLNEE TNELVPGLEN LSLYNDHQSI NPFLGNTINS HFVENQDQGL VNNENLEFAN DDQLERNEIL TTYSVEDINN LSINNVKLNS
401: NGETLNSTAA NLEMLFPTLD MNIVNQHQGQ VLSGGNLEFA NDNQLERNAI LAGYSIEDIN NLSINNHQGQ VLSGVNFEFA NDNQFERNAI LAGYSIEDIN
501: NLSINNVNDN SNEETLNSIA ANNEMNFTIL DVNTINQVNG NSNEETLNSI VANSEINFTT LDVNTINQVD NNFNEETLNS IAANSEMNFT TLDVNIINEE
601: EQGAVDMMDI VITFDEEEED VAALTDIPEQ DVEILTDVPE QGVTDLTDVP LTFDQDWKDD GLMNFMLDVD DMF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)