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AT5G62070.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.972
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : IQ-domain 23
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
IQ-domain 23 (IQD23); CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: IQ-domain 24 (TAIR:AT5G07240.1); Has 854 Blast hits to 833 proteins in 54 species: Archae - 0; Bacteria - 0; Metazoa - 62; Fungi - 7; Plants - 775; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JCT8eggNOG:ENOG4111BAYEMBL:AB016880EMBL:AY050323EMBL:AY143917EMBL:CP002688EnsemblPlants:AT5G62070
EnsemblPlants:AT5G62070.1entrez:836327GeneID:836327Gramene:AT5G62070.1hmmpanther:PTHR32295hmmpanther:PTHR32295:SF11IntAct:Q9FIT1
InterPro:IPR000048InterPro:IPR025064InterPro:IPR027417KEGG:ath:AT5G62070OMA:RSEYSWGPfam:PF00612Pfam:PF13178
Pfscan:PS50096PhylomeDB:Q9FIT1PROSITE:PS50096Proteomes:UP000006548RefSeq:NP_201013.1SMART:SM00015STRING:3702.AT5G62070.1
SUPFAM:SSF52540TAIR:AT5G62070tair10-symbols:IQD23UniGene:At.26591UniProt:Q9FIT1
Coordinates (TAIR10) chr5:-:24930057..24932451
Molecular Weight (calculated) 44273.50 Da
IEP (calculated) 11.04
GRAVY (calculated) -0.79
Length 403 amino acids
Sequence (TAIR10)
(BLAST)
001: MGFFGRLFGS KKKSDKAASS RDKRRWSFTT RSSNSSKRAP AVTSASVVEQ NGLDADKHAI AVAAATAAVA EAALTAAHAA AEVVRLTSGN GGRNVGGGGN
101: SSVFQIGRSN RRWAQENIAA MKIQSAFRGY LARRALRALK ALVKLQALVR GHIVRKQTAD MLRRMQTLVR LQSQARARAS RSSHSSASFH SSTALLFPSS
201: SSSPRSLHTR CVSNAEVSSL DHRGGSKRLD WQAEESENGD KILEVDTWKP HYHPKPLRSE RNNESPRKRQ QSLLGPRSTE NSPQVGSSGS RRRTPFTPTS
301: RSEYSWGCNN YYYSGYHPNY MANTESYKAK VRSQSAPKQR VEVSNETSGY KRSVQGQYYY YTAVEEESLD VGSAGYYGGG GGDSDRLNRN QSAKSRMHSS
401: FLV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)