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AT5G62000.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : auxin response factor 2
Curator
Summary (TAIR10)
Encodes an auxin response factor. Mutants have many defects including enlarged rosette leaves, reduced fertility, later senescence, hypocotyl elongation defects, enlarged seeds and enlarged cotyledons. May not mediate auxin effects. Increase in seed size due to increased cell proliferation.
Computational
Description (TAIR10)
auxin response factor 2 (ARF2); FUNCTIONS IN: protein binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: in 7 processes; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), Transcriptional factor B3 (InterPro:IPR003340), AUX/IAA protein (InterPro:IPR003311), Auxin response factor (InterPro:IPR010525); BEST Arabidopsis thaliana protein match is: auxin response factor 1 (TAIR:AT1G59750.2); Has 2589 Blast hits to 2182 proteins in 92 species: Archae - 0; Bacteria - 2; Metazoa - 4; Fungi - 2; Plants - 2572; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).
Protein Annotations
BioGrid:21565DIP:DIP-46014NeggNOG:ENOG410IE1ZeggNOG:ENOG4110RNJEMBL:AB016880EMBL:AF336918EMBL:AF378862
EMBL:AJ441313EMBL:AJ458328EMBL:AK221252EMBL:AK221254EMBL:AK221274EMBL:AK221277EMBL:AK221282
EMBL:AK221305EMBL:AY669787EMBL:BT000784EMBL:BT001072EMBL:CP002688EMBL:U89771EnsemblPlants:AT5G62000
EnsemblPlants:AT5G62000.1EnsemblPlants:AT5G62000.2EnsemblPlants:AT5G62000.3entrez:836321ExpressionAtlas:Q94JM3Gene3D:2.40.330.10GeneID:836321
Genevisible:Q94JM3GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0008285GO:GO:0009734GO:GO:0009737
GO:GO:0009911GO:GO:0010047GO:GO:0010150GO:GO:0010227GO:GO:0043565GO:GO:0045892GO:GO:0048481
hmmpanther:PTHR31384hmmpanther:PTHR31384:SF8InParanoid:Q94JM3IntAct:Q94JM3InterPro:IPR000270InterPro:IPR003340InterPro:IPR010525
InterPro:IPR015300InterPro:IPR033389iPTMnet:Q94JM3OMA:DEENDMMPaxDb:Q94JM3Pfam:PF02309Pfam:PF02362
Pfam:PF06507Pfam:Q94JM3Pfscan:PS50863Pfscan:PS51745PhylomeDB:Q94JM3PRIDE:Q94JM3PRO:PR:Q94JM3
PROSITE:PS50863PROSITE:PS51745ProteinModelPortal:Q94JM3Proteomes:UP000006548RefSeq:NP_201006.2RefSeq:NP_851244.1RefSeq:NP_974980.1
SMART:SM01019SMR:Q94JM3STRING:3702.AT5G62000.1SUPFAM:SSF101936SUPFAM:SSF54277TAIR:AT5G62000tair10-symbols:ARF1-BP
tair10-symbols:ARF2tair10-symbols:HSStair10-symbols:ORE14UniGene:At.21704UniProt:Q94JM3
Coordinates (TAIR10) chr5:+:24910859..24914680
Molecular Weight (calculated) 95705.90 Da
IEP (calculated) 6.60
GRAVY (calculated) -0.70
Length 859 amino acids
Sequence (TAIR10)
(BLAST)
001: MASSEVSMKG NRGGDNFSSS GFSDPKETRN VSVAGEGQKS NSTRSAAAER ALDPEAALYR ELWHACAGPL VTVPRQDDRV FYFPQGHIEQ VEASTNQAAE
101: QQMPLYDLPS KLLCRVINVD LKAEADTDEV YAQITLLPEA NQDENAIEKE APLPPPPRFQ VHSFCKTLTA SDTSTHGGFS VLRRHADECL PPLDMSRQPP
201: TQELVAKDLH ANEWRFRHIF RGQPRRHLLQ SGWSVFVSSK RLVAGDAFIF LRGENGELRV GVRRAMRQQG NVPSSVISSH SMHLGVLATA WHAISTGTMF
301: TVYYKPRTSP SEFIVPFDQY MESVKNNYSI GMRFKMRFEG EEAPEQRFTG TIVGIEESDP TRWPKSKWRS LKVRWDETSS IPRPDRVSPW KVEPALAPPA
401: LSPVPMPRPK RPRSNIAPSS PDSSMLTREG TTKANMDPLP ASGLSRVLQG QEYSTLRTKH TESVECDAPE NSVVWQSSAD DDKVDVVSGS RRYGSENWMS
501: SARHEPTYTD LLSGFGTNID PSHGQRIPFY DHSSSPSMPA KRILSDSEGK FDYLANQWQM IHSGLSLKLH ESPKVPAATD ASLQGRCNVK YSEYPVLNGL
601: STENAGGNWP IRPRALNYYE EVVNAQAQAQ AREQVTKQPF TIQEETAKSR EGNCRLFGIP LTNNMNGTDS TMSQRNNLND AAGLTQIASP KVQDLSDQSK
701: GSKSTNDHRE QGRPFQTNNP HPKDAQTKTN SSRSCTKVHK QGIALGRSVD LSKFQNYEEL VAELDRLFEF NGELMAPKKD WLIVYTDEEN DMMLVGDDPW
801: QEFCCMVRKI FIYTKEEVRK MNPGTLSCRS EEEAVVGEGS DAKDAKSASN PSLSSAGNS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)