AT5G61990.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Pentatricopeptide repeat (PPR) superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Pentatricopeptide repeat (PPR) superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G59900.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:24900186..24903110 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 108816.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.63 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.03 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 974 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MMGSMLFRKR TLVTRANFLL FRSFSVNVEK LSDASAEIAG ILKQENWRDT LVSSNLSIEI NPEVVLSVLR SKRVDDPSKL LSFFNWVDSQ KVTEQKLDSF 101: SFLALDLCNF GSFEKALSVV ERMIERNWPV AEVWSSIVRC SQEFVGKSDD GVLFGILFDG YIAKGYIEEA VFVFSSSMGL ELVPRLSRCK VLLDALLRWN 201: RLDLFWDVYK GMVERNVVFD VKTYHMLIIA HCRAGNVQLG KDVLFKTEKE FRTATLNVDG ALKLKESMIC KGLVPLKYTY DVLIDGLCKI KRLEDAKSLL 301: VEMDSLGVSL DNHTYSLLID GLLKGRNADA AKGLVHEMVS HGINIKPYMY DCCICVMSKE GVMEKAKALF DGMIASGLIP QAQAYASLIE GYCREKNVRQ 401: GYELLVEMKK RNIVISPYTY GTVVKGMCSS GDLDGAYNIV KEMIASGCRP NVVIYTTLIK TFLQNSRFGD AMRVLKEMKE QGIAPDIFCY NSLIIGLSKA 501: KRMDEARSFL VEMVENGLKP NAFTYGAFIS GYIEASEFAS ADKYVKEMRE CGVLPNKVLC TGLINEYCKK GKVIEACSAY RSMVDQGILG DAKTYTVLMN 601: GLFKNDKVDD AEEIFREMRG KGIAPDVFSY GVLINGFSKL GNMQKASSIF DEMVEEGLTP NVIIYNMLLG GFCRSGEIEK AKELLDEMSV KGLHPNAVTY 701: CTIIDGYCKS GDLAEAFRLF DEMKLKGLVP DSFVYTTLVD GCCRLNDVER AITIFGTNKK GCASSTAPFN ALINWVFKFG KTELKTEVLN RLMDGSFDRF 801: GKPNDVTYNI MIDYLCKEGN LEAAKELFHQ MQNANLMPTV ITYTSLLNGY DKMGRRAEMF PVFDEAIAAG IEPDHIMYSV IINAFLKEGM TTKALVLVDQ 901: MFAKNAVDDG CKLSISTCRA LLSGFAKVGE MEVAEKVMEN MVRLQYIPDS ATVIELINES CISSNQRVEA DAVP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)