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AT5G61990.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pentatricopeptide repeat (PPR) superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pentatricopeptide repeat (PPR) superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G59900.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AB016880EMBL:AY039979EMBL:BT008689EMBL:CP002688EnsemblPlants:AT5G61990
EnsemblPlants:AT5G61990.1entrez:836320Gene3D:1.25.40.10GeneID:836320Genevisible:Q9FIT7GO:GO:0005739Gramene:AT5G61990.1
hmmpanther:PTHR24015hmmpanther:PTHR24015:SF688HOGENOM:HOG000083429InParanoid:Q9FIT7InterPro:IPR002885InterPro:IPR011990KEGG:ath:AT5G61990
KO:K17964OMA:SSTAPFNPaxDb:Q9FIT7Pfam:PF01535Pfam:PF12854Pfam:PF13041Pfam:PF13812
Pfam:Q9FIT7Pfscan:PS51375PhylomeDB:Q9FIT7PRIDE:Q9FIT7PRO:PR:Q9FIT7PROSITE:PS51375ProteinModelPortal:Q9FIT7
Proteomes:UP000006548RefSeq:NP_568948.1SMR:Q9FIT7STRING:3702.AT5G61990.1SUPFAM:SSF48452TAIR:AT5G61990TIGRfam:TIGR00756
TIGRFAMs:TIGR00756UniGene:At.55675UniGene:At.9377UniProt:Q9FIT7
Coordinates (TAIR10) chr5:-:24900186..24903110
Molecular Weight (calculated) 108816.00 Da
IEP (calculated) 5.63
GRAVY (calculated) 0.03
Length 974 amino acids
Sequence (TAIR10)
(BLAST)
001: MMGSMLFRKR TLVTRANFLL FRSFSVNVEK LSDASAEIAG ILKQENWRDT LVSSNLSIEI NPEVVLSVLR SKRVDDPSKL LSFFNWVDSQ KVTEQKLDSF
101: SFLALDLCNF GSFEKALSVV ERMIERNWPV AEVWSSIVRC SQEFVGKSDD GVLFGILFDG YIAKGYIEEA VFVFSSSMGL ELVPRLSRCK VLLDALLRWN
201: RLDLFWDVYK GMVERNVVFD VKTYHMLIIA HCRAGNVQLG KDVLFKTEKE FRTATLNVDG ALKLKESMIC KGLVPLKYTY DVLIDGLCKI KRLEDAKSLL
301: VEMDSLGVSL DNHTYSLLID GLLKGRNADA AKGLVHEMVS HGINIKPYMY DCCICVMSKE GVMEKAKALF DGMIASGLIP QAQAYASLIE GYCREKNVRQ
401: GYELLVEMKK RNIVISPYTY GTVVKGMCSS GDLDGAYNIV KEMIASGCRP NVVIYTTLIK TFLQNSRFGD AMRVLKEMKE QGIAPDIFCY NSLIIGLSKA
501: KRMDEARSFL VEMVENGLKP NAFTYGAFIS GYIEASEFAS ADKYVKEMRE CGVLPNKVLC TGLINEYCKK GKVIEACSAY RSMVDQGILG DAKTYTVLMN
601: GLFKNDKVDD AEEIFREMRG KGIAPDVFSY GVLINGFSKL GNMQKASSIF DEMVEEGLTP NVIIYNMLLG GFCRSGEIEK AKELLDEMSV KGLHPNAVTY
701: CTIIDGYCKS GDLAEAFRLF DEMKLKGLVP DSFVYTTLVD GCCRLNDVER AITIFGTNKK GCASSTAPFN ALINWVFKFG KTELKTEVLN RLMDGSFDRF
801: GKPNDVTYNI MIDYLCKEGN LEAAKELFHQ MQNANLMPTV ITYTSLLNGY DKMGRRAEMF PVFDEAIAAG IEPDHIMYSV IINAFLKEGM TTKALVLVDQ
901: MFAKNAVDDG CKLSISTCRA LLSGFAKVGE MEVAEKVMEN MVRLQYIPDS ATVIELINES CISSNQRVEA DAVP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)