AT5G61960.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : MEI2-like protein 1 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
A member of mei2-like gene family, predominantly plant-based family of genes encoding RNA binding proteins with characteristic presence of a highly conserved RNA binding motif first described in the mei2 gene of the fission yeast S. pombe. In silico analyses reveal nine mei2 -like genes in A. thaliana. They were grouped into four distinct clades, based on overall sequence similarity and subfamily-specific sequence elements. AML1 is a member of two sister clades of mei2-like gene family, AML1 through AML5 and belongs to the clade named ALM14. AML1 is expressed during early embryo development, particularly along embryonic axis at torpedo stage, in shoot apex (weaker expression) and in the organogenic regions of floral apices. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
MEI2-like protein 1 (ML1); CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), RNA recognition motif 2 (InterPro:IPR007201), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: MEI2-like 4 (TAIR:AT5G07290.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr5:-:24879001..24883483 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 100794.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.97 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.63 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 915 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MPSDIMEQRG VSTPSHFHED IHITSERQFG FMKTDMMPEN QGGRDRLSSM PKSSWTSESY QLKPQSSFSG SHPSGSPNAR NTTNGSQWES SLFSSSMSDL 101: FSRKLRLQGS DMLSTMSANT VVTHREEEPS ESLEEIEAQT IGNLLPDEDD LFAEVTGEVG RKSRANTGDE LDEFDLFSSV GGMELDGDIF SSVSHRNGER 201: GGNNSVGELN RGEIPSRTLL VGNISSNVED YELKVLFEQF GDIQALHTAC KNRGFIMVSY CDIRAAQNAA RALQNKLLRG TKLDIRYSIS KENPSQKDTS 301: KGALLVNNLD SSISNQELNR LVKSYGEVKE IRRTMHDNSQ IYIEFFDVRA AAAALGGLNG LEVAGKKLQL VPTYPEGTRY TSQCAANDTE GCLPKTSYSN 401: TSSGHIGRHF PGMISSTSSD GGSMRVIHNS IGSPVNSFIE RHRSLSIPIG FPPSANGISA SKPVGLQEHG HHFDNSNMGI QSMPNLHPHS FSEYVDNFAN 501: GSPYTSSAFS EMVSDGSKAN EGFMIHNVRG VEGFSGGGIG SPMHQSSRRP INLWSNSNTQ QQNPSSGMMW PNSPSHINSI PTQRPPVTVF SRAPPIMVNM 601: ASSPVHHHIG SAPVLNSPFW DRRQAYVAES LESSGFHIGS HGSMGIPGSS PSHPMDIGSH KTFSVGGNRM DVNSQNAVLR SPQQLSHLFP GRSPMGSMPG 701: SFDSPNERYR NLSHRRSESS SSNADKKLYE LDVDRILRGE DRRTTLMIKN IPNKYTSKML LSAIDEHCKG TYDFLYLPID FKNKCNVGYA FINLIEPEKI 801: VPFFKAFNGK KWEKFNSEKV ATLTYARIQG KTALIAHFQN SSLMNEDKRC RPILFHTDGP NAGDQEPFPM GSNIRSRPGK PRSSSIDNYN SFSISSVSEN 901: REETPNGTDP FLKEN |
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)