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AT5G61930.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.934
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Arabidopsis thaliana protein of unknown function (DUF794)
Curator
Summary (TAIR10)
ACCUMULATION OF PHOTOSYSTEM ONE 3
Computational
Description (TAIR10)
ACCUMULATION OF PHOTOSYSTEM ONE 3 (APO3); INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF794, plant (InterPro:IPR008512); BEST Arabidopsis thaliana protein match is: Arabidopsis thaliana protein of unknown function (DUF794) (TAIR:AT1G64810.2); Has 145 Blast hits to 119 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 145; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IKQ5eggNOG:ENOG410YDZDEMBL:AB022212EMBL:AF370553EMBL:BT002086EMBL:CP002688EnsemblPlants:AT5G61930
EnsemblPlants:AT5G61930.1EnsemblPlants:AT5G61930.2entrez:836314GeneID:836314Genevisible:Q9FH50GO:GO:0003723GO:GO:0005739
Gramene:AT5G61930.1Gramene:AT5G61930.2hmmpanther:PTHR10388hmmpanther:PTHR10388:SF11HOGENOM:HOG000239455InParanoid:Q9FH50InterPro:IPR023342
KEGG:ath:AT5G61930OMA:ARNSLHVPaxDb:Q9FH50Pfam:PF05634Pfam:Q9FH50Pfscan:PS51499PhylomeDB:Q9FH50
PRIDE:Q9FH50PRO:PR:Q9FH50PROSITE:PS51499Proteomes:UP000006548RefSeq:NP_001119475.1RefSeq:NP_568945.2STRING:3702.AT5G61930.1
TAIR:AT5G61930tair10-symbols:APO3UniGene:At.55672UniGene:At.7885UniProt:Q9FH50
Coordinates (TAIR10) chr5:-:24866230..24867665
Molecular Weight (calculated) 45914.50 Da
IEP (calculated) 8.37
GRAVY (calculated) -0.47
Length 402 amino acids
Sequence (TAIR10)
(BLAST)
001: MQRRKLVEIS IFVIRKSNFS SSIKSLTNLD VDVSVDNDED PLYADVPKPP KDKSERKPYP TPMKELIRRA KEEKQLRKLQ PCRVLEDPPD NGLLVPELVD
101: VAHCVHRCRN MLLSGLSKII HHVPVHRCRL CAEVHIGKQG HEIRTCTGPG SGSRSATHVW KRGRVSDVVL FPKCFHLYDR AVKPRVIHDE RFTVPKISAV
201: LELCIQAGVD LEKFPSKRRS KPVYSIEGRI VDFEDVNDGN SELAVTSTTT LIQEDDRCKE EKKSLKELSF ETMESWFEMV LGVRKLMERY RVWTCGYCPE
301: IQVGPKGHKV RMCKATKHQM RDGMHAWQEA TIDDVVGPTY VWHVRDPTDG SVLDNSLKRF YGKAPAVIEM CVQGGAPVPD QYNSMMRLDV VYPQRDEVDL
401: VA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)