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AT5G61910.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : DCD (Development and Cell Death) domain protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
DCD (Development and Cell Death) domain protein; CONTAINS InterPro DOMAIN/s: Development/cell death domain (InterPro:IPR013989), Kelch related (InterPro:IPR013089); BEST Arabidopsis thaliana protein match is: DCD (Development and Cell Death) domain protein (TAIR:AT2G32910.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XPC8eggNOG:KOG1327EMBL:AK228835EMBL:AY064976
EMBL:CP002688EnsemblPlants:AT5G61910EnsemblPlants:AT5G61910.1EnsemblPlants:AT5G61910.2
entrez:836311entrez:836312ExpressionAtlas:Q8VZG6GeneID:836312
Gramene:AT5G61910.1Gramene:AT5G61910.2hmmpanther:PTHR10857hmmpanther:PTHR10857:SF12
HOGENOM:HOG000131625InterPro:IPR013989Pfam:PF10539Pfscan:PS51222
PROSITE:PS51222Proteomes:UP000006548Reactome:R-ATH-1483206RefSeq:NP_200997.2
RefSeq:NP_974978.1SMART:SM00767STRING:3702.AT5G61910.4TAIR:AT5G61910
UniGene:At.20314UniProt:Q8VZG6
Coordinates (TAIR10) chr5:-:24861091..24863729
Molecular Weight (calculated) 80524.20 Da
IEP (calculated) 6.72
GRAVY (calculated) -0.72
Length 738 amino acids
Sequence (TAIR10)
(BLAST)
001: METEMDFSDG EQTNGNSHVT ASQYFAPPGY NRSLVAAYGN GNTTIGLEKG IERRLDHHEQ LPGYIFMCNG RTKTDCYRYR VFGIPRGGKD VVESIKPGMK
101: LFLYDFEKRL LYGVYEATVG GRLDIEPEAF EGKYPAQVGF RIVMNCLPLT ENTFKSAIYE NYKGSKFKQE LSPHQVMSLL SLFRSFTSPE LDLLPHRLAS
201: RASAPRTLSF EERFIAATHL RNASSVLDPL SARHVEPRLG SVMAHQPVPR TSLLQHSYFR QDDYTTPPRE SLSNLNQPYY PTEARQLRLL GDPSRSDSPR
301: SEPPRSSIQD PQLKYLTILS NIRRYGSASD RLASENEYHP ATPSEKDQFA VPYSDNKNYP STLSGSEHPS ASAANGSVYR SEFYNSASQK EGEASQQHEI
401: PAGTYHHPEA STVSNTTKSM QPDMQAVSVA QSHTETAGYP TPAHGEASQP PAGAIGYTHQ PQSVAGNYST HSQPGNVEES TQSYAGTDSY SQQQYYAAMG
501: PTTQLHAGGY IQKPHEIGYS QQPHDAATGY SQQPHDAATG YSQQPHDAAT GYSQQPHAAS TGYSQQTYAA ATGYTQQPHA AAAGYTQQPH AAATGYSQQP
601: HAAATAHAQQ PYAAATAHAQ QLHAVATGYA LQLHAAATGY AQQPHAAATG YALQPHAQAV EYTMQPHAQA VGYMPQYHAH AVVYSQQGVT QGSVPRAPGT
701: TDCNAANQAY SATGDWNAVH QSYYPQTADA TTTYYQTS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)