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AT5G61890.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Integrase-type DNA-binding superfamily protein
Curator
Summary (TAIR10)
encodes a member of the ERF (ethylene response factor) subfamily B-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily.
Computational
Description (TAIR10)
Integrase-type DNA-binding superfamily protein; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT5G07310.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:21554eggNOG:ENOG410J1N4eggNOG:ENOG410YY7DEMBL:AB022212EMBL:AY560862EMBL:BT031357EMBL:CP002688
EnsemblPlants:AT5G61890EnsemblPlants:AT5G61890.1entrez:836310ExpressionAtlas:Q9FH54Gene3D:3.30.730.10GeneID:836310Genevisible:Q9FH54
GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0009873GO:GO:0050832Gramene:AT5G61890.1
hmmpanther:PTHR31190hmmpanther:PTHR31190:SF10HOGENOM:HOG000057294InParanoid:Q9FH54InterPro:IPR001471InterPro:IPR016177KEGG:ath:AT5G61890
OMA:VAPTHQDPaxDb:B2GVM6PaxDb:Q9FH54Pfam:PF00847Pfam:Q9FH54Pfscan:PS51032PhylomeDB:Q9FH54
PRIDE:Q9FH54PRINTS:PR00367PRO:PR:Q9FH54PROSITE:PS51032ProteinModelPortal:Q9FH54Proteomes:UP000006548RefSeq:NP_200995.1
SMART:SM00380SMR:Q9FH54STRING:3702.AT5G61890.1SUPFAM:SSF54171TAIR:AT5G61890UniGene:At.29079UniProt:B2GVM6
UniProt:Q9FH54
Coordinates (TAIR10) chr5:-:24852639..24853744
Molecular Weight (calculated) 27727.40 Da
IEP (calculated) 6.16
GRAVY (calculated) -1.04
Length 248 amino acids
Sequence (TAIR10)
(BLAST)
001: MYGKRPFGGD ESEEREEDEN LFPVFSARSQ HDMRVMVSAL TQVIGNQQSK SHDNISSIDD NYPSVYNPQD PNQQVAPTHQ DQGDLRRRHY RGVRQRPWGK
101: WAAEIRDPKK AARVWLGTFE TAESAALAYD EAALKFKGSK AKLNFPERVQ LGSNSTYYSS NQIPQMEPQS IPNYNQYYHD ASSGDMLSFN LGGGYGSGTG
201: YSMSHDNSTT TAATTSSSSG GSSRQQEEQD YARFWRFGDS SSSPHSGY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)