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AT5G61880.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein Transporter, Pam16
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein Transporter, Pam16; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein Transporter, Pam16 (InterPro:IPR005341); BEST Arabidopsis thaliana protein match is: Protein Transporter, Pam16 (TAIR:AT3G59280.1); Has 384 Blast hits to 384 proteins in 161 species: Archae - 0; Bacteria - 0; Metazoa - 161; Fungi - 124; Plants - 79; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG411286GeggNOG:KOG3442EMBL:AY039584EMBL:AY054150EMBL:AY085331EMBL:CP002688EnsemblPlants:AT5G61880
EnsemblPlants:AT5G61880.1EnsemblPlants:AT5G61880.2entrez:836309GeneID:836309GO:GO:0005744GO:GO:0030150Gramene:AT5G61880.1
Gramene:AT5G61880.2hmmpanther:PTHR12388hmmpanther:PTHR12388:SF2HOGENOM:HOG000180095InterPro:IPR005341KEGG:ath:AT5G61880KO:K17805
OMA:RACTQAYPANTHER:PTHR12388Pfam:PF03656PhylomeDB:Q93W66Proteomes:UP000006548RefSeq:NP_568943.1RefSeq:NP_851243.1
STRING:3702.AT5G61880.1TAIR:AT5G61880UniGene:At.8501UniProt:Q93W66
Coordinates (TAIR10) chr5:+:24850598..24851512
Molecular Weight (calculated) 12311.70 Da
IEP (calculated) 9.82
GRAVY (calculated) -0.27
Length 113 amino acids
Sequence (TAIR10)
(BLAST)
001: MAARVLASVI VMGSGIIARA CTQAYRQALA NASKTGVAHE ATQTIKRGLT IGEAEARQIL GVTEKSSWDE ILKKYDTLFE RNAQNGSFYL QSKVHRAKEC
101: LETAYQKSTT TSA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)