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AT5G61770.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30961429 (2019): nucleus
  • PMID:29104584 (2017): nucleus nuclear matrix nucleolus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:22550958 (2012): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : PETER PAN-like protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
PETER PAN-like protein (PPAN); CONTAINS InterPro DOMAIN/s: Brix domain (InterPro:IPR007109); Has 946 Blast hits to 859 proteins in 217 species: Archae - 0; Bacteria - 10; Metazoa - 449; Fungi - 173; Plants - 58; Viruses - 18; Other Eukaryotes - 238 (source: NCBI BLink).
Protein Annotations
BioGrid:21543eggNOG:ENOG410XRP7eggNOG:KOG2963EMBL:AB010069
EMBL:AF361824EMBL:AY056064EMBL:AY069910EMBL:CP002688
EnsemblPlants:AT5G61770EnsemblPlants:AT5G61770.1entrez:836299ExpressionAtlas:Q9ASU7
GeneID:836299Genevisible:Q9ASU7hmmpanther:PTHR12661HOGENOM:HOG000210038
InParanoid:Q9ASU7InterPro:IPR007109iPTMnet:Q9ASU7KEGG:ath:AT5G61770
KO:K14859ncoils:CoilPaxDb:Q9ASU7Pfam:PF04427
Pfam:Q9ASU7Pfscan:PS50833PhylomeDB:Q9ASU7PRIDE:Q9ASU7
PRO:PR:Q9ASU7PROSITE:PS50833Proteomes:UP000006548RefSeq:NP_568939.2
RefSeq:NP_851242.1RefSeq:NP_974976.1SMART:SM00879STRING:3702.AT5G61770.2
TAIR:AT5G61770tair10-symbols:PPANUniGene:At.20157UniProt:Q9ASU7
Coordinates (TAIR10) chr5:+:24815888..24817495
Molecular Weight (calculated) 38843.70 Da
IEP (calculated) 8.44
GRAVY (calculated) -0.55
Length 345 amino acids
Sequence (TAIR10)
(BLAST)
001: MGRFKNNKKS RVIGKPIAKK NQEDVSHVTG DKIPKSFVFS RMKLAGPVKQ LQMDLRKLML PYTALSLKEK KRNTLRDFLN VSGPMGVTHF LMLSKTASSL
101: SLRVARTPQG PTLTFKIHQY SLASDIAQSQ LRPRCPQDLF KSPPLIVLSG FGSQELHLKL ATIMFQNIFP AIDINTVKLS TCQRLVLLNY NKDTKLIDFR
201: HYSIRLQPVG VSRRIRKFVQ NHQVPDLRNL QDVSDFVTKA GYGSESEGDE EAATVTLSSD LGRVNKGATK SAVKLQEIGP RMTMQLVKVE EGLCTGGIIF
301: SEYDVDGKKE KLKKKQDEEE EEDSEEEGEE GSEEDGEDMD EDFED
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)