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AT5G61670.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Encodes a close homolog of the Cauliflower OR (Orange) protein. The function of OR is to induce the differentiation of proplastids or other noncolored plastids into chromoplasts for carotenoid accumulation. Both proteins contain a Cysteine-rich zinc finger domain that is highly specific to DnaJ-like molecular chaperons.
Computational
Description (TAIR10)
BEST Arabidopsis thaliana protein match is: chaperone protein dnaJ-related (TAIR:AT5G06130.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IGZGeggNOG:ENOG4110IJHEMBL:AB012239EMBL:AY065401EMBL:AY084568EMBL:AY094431EMBL:AY117226
EMBL:AY149953EMBL:CP002688EMBL:JF304772EnsemblPlants:AT5G61670EnsemblPlants:AT5G61670.1EnsemblPlants:AT5G61670.2entrez:836289
GeneID:836289GO:GO:0005634GO:GO:0009507GO:GO:0016021GO:GO:0050821GO:GO:1904143Gramene:AT5G61670.1
Gramene:AT5G61670.2hmmpanther:PTHR15852hmmpanther:PTHR15852:SF24HOGENOM:HOG000265745KEGG:ath:AT5G61670OMA:KTERCPNPhylomeDB:Q9FKF4
Proteomes:UP000006548RefSeq:NP_200975.1RefSeq:NP_974975.1SMR:Q9FKF4STRING:3702.AT5G61670.1TAIR:AT5G61670TMHMM:TMhelix
UniGene:At.28655UniProt:Q9FKF4
Coordinates (TAIR10) chr5:+:24783629..24785201
Molecular Weight (calculated) 33791.80 Da
IEP (calculated) 7.63
GRAVY (calculated) -0.08
Length 307 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSLGRILSV SYPPDPYTWR FSQYKLSSSL GRNRRLRWRF TALDPESSSL DSESSADKFA SGFCIIEGPE TVQDFAKMQL QEIQDNIRSR RNKIFLHMEE
101: VRRLRIQQRI KNTELGIINE EQEHELPNFP SFIPFLPPLT AANLKVYYAT CFSLIAGIIL FGGLLAPTLE LKLGIGGTSY ADFIQSLHLP MQLSQVDPIV
201: ASFSGGAVGV ISALMVVEVN NVKQQEHKRC KYCLGTGYLA CARCSSTGAL VLTEPVSAIA GGNHSLSPPK TERCSNCSGA GKVMCPTCLC TGMAMASEHD
301: PRIDPFD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)