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AT5G61590.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Integrase-type DNA-binding superfamily protein
Curator
Summary (TAIR10)
encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5.
Computational
Description (TAIR10)
Integrase-type DNA-binding superfamily protein; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT5G07580.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IYJIeggNOG:ENOG4111416EMBL:AB012239EMBL:AY045968
EMBL:AY079321EMBL:AY085939EMBL:CP002688EnsemblPlants:AT5G61590
EnsemblPlants:AT5G61590.1entrez:836280Gene3D:3.30.730.10GeneID:836280
Genevisible:Q9FKG2GO:GO:0000976GO:GO:0003700GO:GO:0005634
GO:GO:0006351GO:GO:0009414GO:GO:0009873GO:GO:0044212
GO:GO:0045893GO:GO:1904277Gramene:AT5G61590.1hmmpanther:PTHR31677
hmmpanther:PTHR31677:SF24HOGENOM:HOG000272710InterPro:IPR001471InterPro:IPR016177
KEGG:ath:AT5G61590OMA:PDGFIEDPaxDb:Q9FKG2Pfam:PF00847
Pfam:Q9FKG2Pfscan:PS51032PhylomeDB:Q9FKG2PRIDE:Q9FKG2
PRINTS:PR00367PRO:PR:Q9FKG2PROSITE:PS51032ProteinModelPortal:Q9FKG2
Proteomes:UP000006548RefSeq:NP_200967.1SMART:SM00380SMR:Q9FKG2
STRING:3702.AT5G61590.1SUPFAM:SSF54171TAIR:AT5G61590UniGene:At.24138
UniProt:Q9FKG2
Coordinates (TAIR10) chr5:-:24764653..24765258
Molecular Weight (calculated) 22728.40 Da
IEP (calculated) 5.17
GRAVY (calculated) -0.71
Length 201 amino acids
Sequence (TAIR10)
(BLAST)
001: METFEESSDL DVIQKHLFED LMIPDGFIED FVFDDTAFVS GLWSLEPFNP VPKLEPSSPV LDPDSYVQEI LQMEAESSSS SSTTTSPEVE TVSNRKKTKR
101: FEETRHYRGV RRRPWGKFAA EIRDPAKKGS RIWLGTFESD IDAARAYDYA AFKLRGRKAV LNFPLDAGKY DAPVNSCRKR RRTDVPQPQG TTTSTSSSSS
201: N
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)