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AT5G61530.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.671
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi trans-Golgi network
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : small G protein family protein / RhoGAP family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
small G protein family protein / RhoGAP family protein; FUNCTIONS IN: Rho GTPase activator activity; INVOLVED IN: signal transduction; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Rho GTPase activation protein (InterPro:IPR008936), RhoGAP (InterPro:IPR000198); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:21518eggNOG:ENOG410XRR2eggNOG:KOG4270EMBL:AB012239EMBL:AY045924EMBL:AY085460EMBL:AY133882
EMBL:BX831138EMBL:CP002688EnsemblPlants:AT5G61530EnsemblPlants:AT5G61530.1entrez:836274ExpressionAtlas:Q3E875Gene3D:1.10.555.10
GeneID:836274Genevisible:Q3E875GO:GO:0005096GO:GO:0007165hmmpanther:PTHR23176hmmpanther:PTHR23176:SF32HOGENOM:HOG000242319
InParanoid:Q3E875IntAct:Q3E875InterPro:IPR000198InterPro:IPR008936iPTMnet:Q3E875ncoils:CoilPaxDb:Q3E875
Pfam:PF00620Pfam:Q3E875Pfscan:PS50238PhylomeDB:Q3E875PRIDE:Q3E875PRO:PR:Q3E875PROSITE:PS50238
ProteinModelPortal:Q3E875Proteomes:UP000006548RefSeq:NP_568935.1RefSeq:NP_974973.1SMART:SM00324SMR:Q3E875STRING:3702.AT5G61530.1
SUPFAM:SSF48350TAIR:AT5G61530UniGene:At.20302UniProt:Q3E875
Coordinates (TAIR10) chr5:+:24742630..24744586
Molecular Weight (calculated) 41924.90 Da
IEP (calculated) 8.20
GRAVY (calculated) -0.34
Length 376 amino acids
Sequence (TAIR10)
(BLAST)
001: MPSLISQQWQ ERTSGFFSSS GTKLREAGQT AGSFVGEVAK DAKVNVADVA ERVGSLFKSR WAILQQPATR HAVQEHLITA AATTGTFVRK GITETKEKVS
101: VGKIKVEEAA KKTAQKSKTI LTDIERWQKG VASSDVFGVA IEITVQRQES SRPIPLILVK CADYLILTGL NSPNLFKAEG DRKLIQQLVS AYNQDPRASI
201: PEGVNPVDVA ALLKYYLASL PTPLTTFELY NEIKDARSSI HRMRQSLQKL SNVNYNTLEF ITALLLRVSQ KSLLNKMDSH SLAMEMAPVI MWREDNRPES
301: YREYWRRPSR SPKKSNDFET ATPWDLLSDE GEGPDASSSI PLDDIARVDF GAVEVVQCLI EHHNAIFTDA AETVWR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)