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AT5G61460.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : P-loop containing nucleoside triphosphate hydrolases superfamily protein
Curator
Summary (TAIR10)
Encodes SMC6B (STRUCTURAL MAINTENANCE OF CHROMOSOMES 6B), a component of the SMC5/6 complex. SMC5/6 complex promotes sister chromatid alignment and homologous recombination after DNA damage.
Computational
Description (TAIR10)
hypersensitive to MMS, irradiation and MMC (MIM); FUNCTIONS IN: ATP binding; INVOLVED IN: double-strand break repair, sister chromatid cohesion, chromosome segregation, response to X-ray, double-strand break repair via homologous recombination; LOCATED IN: chromosome, nucleus; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: RecF/RecN/SMC protein, N-terminal (InterPro:IPR003395); BEST Arabidopsis thaliana protein match is: structural maintenance of chromosomes 6A (TAIR:AT5G07660.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1196eggNOG:KOG0250EMBL:AB016887EMBL:AF120932
EMBL:AF120933EMBL:CP002688EnsemblPlants:AT5G61460EnsemblPlants:AT5G61460.1
entrez:836267Gene3D:3.40.50.300GeneID:836267Genevisible:Q9FII7
GO:GO:0000724GO:GO:0005524GO:GO:0005634GO:GO:0006302
GO:GO:0007062GO:GO:0010165GO:GO:0030915Gramene:AT5G61460.1
hmmpanther:PTHR19306hmmpanther:PTHR19306:SF6HOGENOM:HOG000030109InParanoid:Q9FII7
InterPro:IPR010935InterPro:IPR027132InterPro:IPR027417InterPro:IPR033268
iPTMnet:Q9FII7KEGG:ath:AT5G61460ncoils:CoilOMA:RGCANEA
PANTHER:PTHR19306PANTHER:PTHR19306:SF6PaxDb:Q9FII7Pfam:PF13476
Pfam:Q9FII7PhylomeDB:Q9FII7PRIDE:Q9FII7PRO:PR:Q9FII7
ProteinModelPortal:Q9FII7Proteomes:UP000006548RefSeq:NP_200954.1SMR:Q9FII7
STRING:3702.AT5G61460.1SUPFAM:0038317SUPFAM:SSF52540SUPFAM:SSF75553
TAIR:AT5G61460tair10-symbols:ATRAD18tair10-symbols:MIMtair10-symbols:SMC6B
UniGene:At.8630UniProt:Q9FII7
Coordinates (TAIR10) chr5:-:24714551..24721841
Molecular Weight (calculated) 121786.00 Da
IEP (calculated) 8.14
GRAVY (calculated) -0.68
Length 1057 amino acids
Sequence (TAIR10)
(BLAST)
0001: MVKSGARASD SFIKQRSGSG SILRIKVENF MCHSNLQIEF GEWVNFITGQ NGSGKSAILT ALCVAFGCRA RGTQRAATLK DFIKTGCSYA VVQVEMKNSG
0101: EDAFKPEIYG GVIIIERRIT ESATATVLKD YLGKKVSNKR DELRELVEHF NIDVENPCVV MSQDKSREFL HSGNDKDKFK FFFKATLLQQ VNDLLQSIYE
0201: HLTKATAIVD ELENTIKPIE KEISELRGKI KNMEQVEEIA QRLQQLKKKL AWSWVYDVDR QLQEQTEKIV KLKERIPTCQ AKIDWELGKV ESLRDTLTKK
0301: KAQVACLMDE STAMKREIES FHQSAKTAVR EKIALQEEFN HKCNYVQKIK DRVRRLERQV GDINEQTMKN TQAEQSEIEE KLKYLEQEVE KVETLRSRLK
0401: EEENCFLEKA FEGRKKMEHI EDMIKNHQKR QRFITSNIND LKKHQTNKVT AFGGDRVINL LQAIERNHRR FRKPPIGPIG SHVTLVNGNK WASSVEQALG
0501: TLLNAFIVTD HKDSLTLRGC ANEANYRNLK IIIYDFSRPR LNIPRHMVPQ TEHPTIFSVI DSDNPTVLNV LVDQSGVERQ VLAENYEEGK AVAFGKRLSN
0601: LKEVYTLDGY KMFFRGPVQT TLPPLSRRPS RLCASFDDQI KDLEIEASKE QNEINQCMRR KREAEENLEE LELKVRQLKK HRSQAEKVLT TKELEMHDLK
0701: NTVAAEIEAL PSSSVNELQR EIMKDLEEID EKEAFLEKLQ NCLKEAELKA NKLTALFENM RESAKGEIDA FEEAENELKK IEKDLQSAEA EKIHYENIMK
0801: NKVLPDIKNA EANYEELKNK RKESDQKASE ICPESEIESL GPWDGSTPEQ LSAQITRMNQ RLHRENQQFS ESIDDLRMMY ESLERKIAKK RKSYQDHREK
0901: LMACKNALDS RWAKFQRNAS LLRRQLTWQF NAHLGKKGIS GHIKVSYENK TLSIEVKMPQ DATSNVVRDT KGLSGGERSF STLCFALALH EMTEAPFRAM
1001: DEFDVFMDAV SRKISLDALV DFAIGEGSQW MFITPHDISM VKSHERIKKQ QMAAPRS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)