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AT5G61380.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : CCT motif -containing response regulator protein
Curator
Summary (TAIR10)
Pseudo response regulator involved in the generation of circadian rhythms. TOC1 appears to shorten the period of circumnutation speed. TOC1 contributes to the plant fitness (carbon fixation, biomass) by influencing the circadian clock period. PRR3 may increase the stability of TOC1 by preventing interactions between TOC1 and the F-box protein ZTL. Expression of TOC1 is correlated with rhythmic changes in chromatin organization.
Computational
Description (TAIR10)
TIMING OF CAB EXPRESSION 1 (TOC1); CONTAINS InterPro DOMAIN/s: CheY-like (InterPro:IPR011006), Signal transduction response regulator, receiver domain (InterPro:IPR001789), CCT domain (InterPro:IPR010402); BEST Arabidopsis thaliana protein match is: pseudo-response regulator 3 (TAIR:AT5G60100.3); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:21503DIP:DIP-33896NeggNOG:COG5641eggNOG:KOG1601EMBL:AB010073EMBL:AB041530EMBL:AF272039
EMBL:AJ251086EMBL:AY094393EMBL:BT005816EMBL:CP002688EnsemblPlants:AT5G61380EnsemblPlants:AT5G61380.1entrez:836259
GeneID:836259Genevisible:Q9LKL2GO:GO:0000160GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006351
GO:GO:0006355GO:GO:0007623GO:GO:0009908GO:GO:0010031GO:GO:0010629Gramene:AT5G61380.1hmmpanther:PTHR26402
hmmpanther:PTHR26402:SF465HOGENOM:HOG000034017InParanoid:Q9LKL2IntAct:Q9LKL2InterPro:IPR001789InterPro:IPR010402InterPro:IPR011006
iPTMnet:Q9LKL2KEGG:ath:AT5G61380KO:K12127MINT:MINT-7908647OMA:HPASADYPaxDb:Q9LKL2Pfam:PF00072
Pfam:PF06203Pfam:Q9LKL2Pfscan:PS50110Pfscan:PS51017PhylomeDB:Q9LKL2PIR:T52075PIR:T52076
PRIDE:Q9LKL2PRO:PR:Q9LKL2PROSITE:PS50110PROSITE:PS51017ProteinModelPortal:Q9LKL2Proteomes:UP000006548RefSeq:NP_200946.1
SMART:SM00448SMR:Q9LKL2STRING:3702.AT5G61380.1SUPFAM:SSF52172TAIR:AT5G61380tair10-symbols:APRR1tair10-symbols:AtTOC1
tair10-symbols:PRR1tair10-symbols:TOC1UniGene:At.21919UniProt:Q9LKL2
Coordinates (TAIR10) chr5:+:24675540..24678176
Molecular Weight (calculated) 69199.30 Da
IEP (calculated) 7.59
GRAVY (calculated) -0.82
Length 618 amino acids
Sequence (TAIR10)
(BLAST)
001: MDLNGECKGG DGFIDRSRVR ILLCDNDSTS LGEVFTLLSE CSYQVTAVKS ARQVIDALNA EGPDIDIILA EIDLPMAKGM KMLRYITRDK DLRRIPVIMM
101: SRQDEVPVVV KCLKLGAADY LVKPLRTNEL LNLWTHMWRR RRMLGLAEKN MLSYDFDLVG SDQSDPNTNS TNLFSDDTDD RSLRSTNPQR GNLSHQENEW
201: SVATAPVHAR DGGLGADGTA TSSLAVTAIE PPLDHLAGSH HEPMKRNSNP AQFSSAPKKS RLKIGESSAF FTYVKSTVLR TNGQDPPLVD GNGSLHLHRG
301: LAEKFQVVAS EGINNTKQAR RATPKSTVLR TNGQDPPLVN GNGSHHLHRG AAEKFQVVAS EGINNTKQAH RSRGTEQYHS QGETLQNGAS YPHSLERSRT
401: LPTSMESHGR NYQEGNMNIP QVAMNRSKDS SQVDGSGFSA PNAYPYYMHG VMNQVMMQSA AMMPQYGHQI PHCQPNHPNG MTGYPYYHHP MNTSLQHSQM
501: SLQNGQMSMV HHSWSPAGNP PSNEVRVNKL DRREEALLKF RRKRNQRCFD KKIRYVNRKR LAERRPRVKG QFVRKMNGVN VDLNGQPDSA DYDDEEEEEE
601: EEEEENRDSS PQDDALGT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)