suba logo
AT5G61330.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : rRNA processing protein-related
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
rRNA processing protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: TRAUB (InterPro:IPR012617); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XWGKeggNOG:KOG2773EMBL:AB010073EMBL:AK227632EMBL:CP002688EnsemblPlants:AT5G61330EnsemblPlants:AT5G61330.1
entrez:836254GeneID:836254GO:GO:0005634Gramene:AT5G61330.1hmmpanther:PTHR15565hmmpanther:PTHR15565:SF0InterPro:IPR012617
InterPro:IPR025160KEGG:ath:AT5G61330KO:K14782ncoils:CoilOMA:ARTPRSCPfam:PF08164Pfam:PF13339
PhylomeDB:Q9FLK0Proteomes:UP000006548RefSeq:NP_200941.2STRING:3702.AT5G61330.1TAIR:AT5G61330UniGene:At.29108UniProt:Q9FLK0
Coordinates (TAIR10) chr5:-:24657287..24660103
Molecular Weight (calculated) 49690.40 Da
IEP (calculated) 4.17
GRAVY (calculated) -1.22
Length 436 amino acids
Sequence (TAIR10)
(BLAST)
001: MAGGSKRSKR ARLDSESEDI SDQENLKAES DNEDDQLPDG IEDDEVDSME DDEGESEEDD EGDTEEDDEG DSEEDDEGEN KEDEDGESED FEDGNDKESE
101: SGDEGNDDNK DAQMEELEKE VKELRSQEQD ILKNLKRDKG EDAVKGQAVK NQKALWDKIL EFRFLLQKAF DRSNRLPQEP VKSLFCSEDE DVSTAYTDLV
201: TSSKKTLDSL LELQEALFEK NPSVDQQVNA TASEESNKSD AEDSDEWQRI SDLQKRMSVF RNKAVDKWQR KTQVTTGAAA IKGKLHAFNQ NVSEQVASYM
301: RDPSRMIKQM QQSRSTVAVF GTVPQEAMEP NPEEKQEEGD PELVEDAEFY RQLLKEFLET IDPASSEAAF YEMKKFQTKK RKVVDRRASK SRKIRYNVHE
401: KIVNFMAPRP AKIPPNTADL LKNLFGLKTR NVQSEA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)