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AT5G61210.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : soluble N-ethylmaleimide-sensitive factor adaptor protein 33
Curator
Summary (TAIR10)
membrane localized t-SNARE SNAP25 homologue, probably involved in cytokinesis and cell plate formation
Computational
Description (TAIR10)
soluble N-ethylmaleimide-sensitive factor adaptor protein 33 (SNAP33); FUNCTIONS IN: protein binding, SNAP receptor activity; INVOLVED IN: vesicle-mediated transport, response to other organism, cellular membrane fusion, response to mechanical stimulus, cytokinesis by cell plate formation; LOCATED IN: integral to membrane of membrane fraction, plasma membrane, chloroplast, cell plate; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SNAP-25 (InterPro:IPR000928), Target SNARE coiled-coil domain (InterPro:IPR000727); BEST Arabidopsis thaliana protein match is: soluble N-ethylmaleimide-sensitive factor adaptor protein 30 (TAIR:AT1G13890.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:21486DIP:DIP-33365NeggNOG:ENOG410Y3Y0eggNOG:KOG3065EMBL:AB006696EMBL:AY057627EMBL:AY085322
EMBL:AY141994EMBL:CP002688EMBL:X92419EMBL:X92420EMBL:Y13198EnsemblPlants:AT5G61210EnsemblPlants:AT5G61210.1
entrez:836242GeneID:836242Genevisible:Q9S7P9GO:GO:0000911GO:GO:0005484GO:GO:0005886GO:GO:0009504
GO:GO:0009507GO:GO:0009612GO:GO:0009737GO:GO:0015031GO:GO:0016021GO:GO:0016192GO:GO:0051707
GO:GO:0061025Gramene:AT5G61210.1hmmpanther:PTHR19305hmmpanther:PTHR19305:SF7HOGENOM:HOG000239040InParanoid:Q9S7P9IntAct:Q9S7P9
InterPro:IPR000727iPTMnet:Q9S7P9KEGG:ath:AT5G61210OMA:MDERNGMPaxDb:Q9S7P9Pfam:Q9S7P9Pfscan:PS50192
PhylomeDB:Q9S7P9PRIDE:Q9S7P9PRO:PR:Q9S7P9PROSITE:PS50192ProteinModelPortal:Q9S7P9Proteomes:UP000006548RefSeq:NP_200929.1
SMART:SM00397SMR:Q9S7P9STRING:3702.AT5G61210.1SUPFAM:SSF58038TAIR:AT5G61210tair10-symbols:ATSNAP33tair10-symbols:ATSNAP33B
tair10-symbols:SNAP33tair10-symbols:SNP33UniGene:At.24457UniGene:At.43359UniGene:At.64808UniProt:Q9S7P9
Coordinates (TAIR10) chr5:+:24624027..24625366
Molecular Weight (calculated) 33646.20 Da
IEP (calculated) 8.44
GRAVY (calculated) -1.08
Length 300 amino acids
Sequence (TAIR10)
(BLAST)
001: MFGLRKSPAN LPKHNSVDLK SSKPNPFDSD DESDNKHTLN PSKRTTSEPS LADMTNPFGG ERVQKGDSSS SKQSLFSNSK YQYKNNFRDS GGIENQSVQE
101: LEGYAVYKAE ETTKSVQGCL KVAEDIRSDA TRTLVMLHDQ GEQITRTHHK AVEIDHDLSR GEKLLGSLGG MFSKTWKPKK TRPINGPVVT RDDSPTRRVN
201: HLEKREKLGL NSAPRGQSRT REPLPESADA YQRVEMEKAK QDDGLSDLSD ILGELKNMAV DMGSEIEKQN KGLDHLHDDV DELNFRVQQS NQRGRRLLGK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)