AT5G61150.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : leo1-like family protein | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes highly hydrophilic protein involved in positively regulating FLC expression. Mutants are early flowering and show a loss of FLC expression in the absence of cold. | ||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
VERNALIZATION INDEPENDENCE 4 (VIP4); INVOLVED IN: negative regulation of flower development, vernalization response; LOCATED IN: cytosol; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Leo1-like protein (InterPro:IPR007149); Has 65962 Blast hits to 30671 proteins in 1602 species: Archae - 182; Bacteria - 8432; Metazoa - 26538; Fungi - 7901; Plants - 3149; Viruses - 848; Other Eukaryotes - 18912 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:24603846..24607528 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 71761.80 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.30 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.49 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 625 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVKGEKRSEM MLNLFGDNSE EEEIESEHEC NRRQPNYASD EAEGGVEPEG EGEAEVEVHG EAEAESDGEQ GDVELDPGES EGEREQSSQE ADPQEESEAR 101: DSDSDNKEEE HGGRVAKKRR QEVVESGSER SGEKHYESED EEVDQTRSPR SPSEEKEEVQ VAQSDVNIRN VFGSSDDEDA EEYVRNDVEQ DEHRSPIEDE 201: EGSEKDLRPD DMVLDDIIPE EDPQYESEAE HVEARYRERP VGPPLEVEVP FRPPPGDPVK MNMIKVSNIM GIDPKPFDAK TFVEEDTFMT DEPGAKNRIR 301: LDNNIVRHRF VKSRDGKTYS ESNARFVRWS DGSLQLLIGN EVLNITEQDA KEDQNHLFIK HEKGILQSQG RILKKMRFTP SSLTSNSHRL LTAIVESRQK 401: KAFKVKNCVT DIDPEREKEK REKAESQNLK ASTKLSQARE KIKRKYPLPV ERRQLSTGYL EDALDEDDED YRSNRGYEED LEAEAQRERR ILNAKKSHKG 501: IPGRSSMTSA RPSRRQMEYS ESEREESEYE TEEEEEEKSP ARGRGKDSED EYEEDAEEDE EERGKSNRYS DEDEEEEEVA GGRAEKDHRG SGRKRKGIES 601: DEEESPPRKA PTHRRKAVID DSDED |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)