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AT5G61130.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Predictors External Curations
AmiGO : plasma membrane 19223515
SwissProt : plasma membrane 16381842
TAIR : plasma membrane 17317660
TAIR : plasma membrane 19223515
TAIR : plasma membrane 14517339
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:19223515 (2009): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : plasmodesmata callose-binding protein 1
Curator
Summary (TAIR10)
Encodes a plasmodesmatal localized protein with callose binding activity. The function of PDCB1 is unknown but overexpression leads to the hyperaccumulation of callose.
Computational
Description (TAIR10)
plasmodesmata callose-binding protein 1 (PDCB1); FUNCTIONS IN: callose binding, polysaccharide binding; INVOLVED IN: callose deposition in cell wall; LOCATED IN: plasmodesma, anchored to plasma membrane, plasma membrane, anchored to membrane, plant-type cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946); BEST Arabidopsis thaliana protein match is: glucan endo-1,3-beta-glucosidase-like protein 3 (TAIR:AT5G08000.1); Has 2214 Blast hits to 2014 proteins in 207 species: Archae - 0; Bacteria - 106; Metazoa - 136; Fungi - 241; Plants - 1436; Viruses - 12; Other Eukaryotes - 283 (source: NCBI BLink).
Protein Annotations
CAZy:CBM43eggNOG:ENOG410IZJ3eggNOG:ENOG410YNCGEMBL:AB006696EMBL:BT003876EMBL:BT005195EMBL:CP002688
EnsemblPlants:AT5G61130EnsemblPlants:AT5G61130.1entrez:836234GeneID:836234Genevisible:Q9FNQ2GO:GO:0001872GO:GO:0005886
GO:GO:0009505GO:GO:0009506GO:GO:0030247GO:GO:0031225GO:GO:0046658GO:GO:0052543Gramene:AT5G61130.1
hmmpanther:PTHR32227hmmpanther:PTHR32227:SF75HOGENOM:HOG000238097InParanoid:Q9FNQ2InterPro:IPR012946KEGG:ath:AT5G61130OMA:HENGACY
PaxDb:Q9FNQ2Pfam:PF07983Pfam:Q9FNQ2PhylomeDB:Q9FNQ2PRIDE:Q9FNQ2PRO:PR:Q9FNQ2ProteinModelPortal:Q9FNQ2
Proteomes:UP000006548RefSeq:NP_200921.2SMART:SM00768SMR:Q9FNQ2STRING:3702.AT5G61130.1TAIR:AT5G61130tair10-symbols:PDCB1
TCDB:1.I.2.1.1UniGene:At.29122UniProt:Q9FNQ2
Coordinates (TAIR10) chr5:-:24587438..24589369
Molecular Weight (calculated) 20365.60 Da
IEP (calculated) 7.57
GRAVY (calculated) -0.12
Length 201 amino acids
Sequence (TAIR10)
(BLAST)
001: MAALVLSLLL LSLAGHSSAS WCVCKTGLSD TVLQATLDYA CGNGADCNPT KPKQSCFNPD NVRSHCNYAV NSFFQKKGQS PGSCNFDGTA TPTNSDPSYT
101: GCAFPTSASG SSGSTTVTPG TTNPKGSPTT TTLPGSGTNS PYSGNPTNGV FGGNSTGGTT GTGINPDYTT DSSAFALKNS SKLFICLLLI ASSGFCSFLM
201: L
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)