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AT5G61090.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 0.912
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Polynucleotidyl transferase, ribonuclease H-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Polynucleotidyl transferase, ribonuclease H-like superfamily protein; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G61120.1); Has 24046 Blast hits to 15037 proteins in 1367 species: Archae - 80; Bacteria - 6670; Metazoa - 6830; Fungi - 2746; Plants - 3211; Viruses - 972; Other Eukaryotes - 3537 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JGJJeggNOG:ENOG4111CCQEMBL:AB006696EMBL:CP002688
EnsemblPlants:AT5G61090EnsemblPlants:AT5G61090.1entrez:836230GeneID:836230
GO:GO:0003676GO:GO:0016740Gramene:AT5G61090.1hmmpanther:PTHR21559
InterPro:IPR012337KEGG:ath:AT5G61090OMA:NGRIMDSPfam:PF13456
PhylomeDB:Q9FNQ6Proteomes:UP000006548RefSeq:NP_200917.4SUPFAM:SSF53098
TAIR:AT5G61090UniGene:At.55652UniProt:Q9FNQ6
Coordinates (TAIR10) chr5:-:24574902..24577585
Molecular Weight (calculated) 72243.20 Da
IEP (calculated) 10.10
GRAVY (calculated) -0.38
Length 657 amino acids
Sequence (TAIR10)
(BLAST)
001: MSPGQLPSDS IKVVPGRSKL RVESSNPVAR GNPTPRASKV KLLSPEEAMK LTSGGNGVAV SPVKPARATS QVPKRVPPSR TPEAPRSVPA CPIPEIPRPV
101: PARPTPETPR PVTARPTPEI PRPVPARPIS EVQTLVPTRP TSTAPSPVSA HPTSVVPSPV SVHPTSVAPS PVSACLTSEA SKPVLANPAA GIRRELVCSL
201: RALSMTTTPV RQRTTPSLLK SKKVEPPSPR ALQIRSRVKQ QAANATKIQQ GAIVEVGDKA KDHGSNEIRR SVSEEELSEL LQYLPAQNPT WNGRIMDSAS
301: PPEFDCEFWS KPASNIRRKA LRRSKAMPAL LKVELLPTCH ILNDVSGRSP TLLNVEMYLF PDEKKTERFT GEHATLFKAM VTRKVMAKAN INGTELLIFS
401: SKLLDKTSQF LINTQKKTEN FLWGFFLQTK NSLGLVPETA SQIDNDFDDG GVVDMDLDNE CLTPRVALKL ITESQKTPSR SPEKVKGEAS VPPGFEKIWT
501: PPLVKLNIQG TSNPLSDLTR SAGIVRDQSG KWVFGYIRCH KSIPEVVAGL LAIYQGLKYL WDSGFRRIHL ETTSFEIINA LTTKSSLFCK SKTLLGACKD
601: MILKEWECDI YHISKEQNSC AEWLAKRSEE QPQELVFFEY PPRGLMDFLE KDRLAAM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)