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AT5G60970.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5
Curator
Summary (TAIR10)
TCP gene involved in heterochronic control of leaf differentiation.
Computational
Description (TAIR10)
TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 (TCP5); CONTAINS InterPro DOMAIN/s: Transcription factor, TCP (InterPro:IPR005333), Transcription factor TCP subgroup (InterPro:IPR017887); BEST Arabidopsis thaliana protein match is: TCP domain protein 17 (TAIR:AT5G08070.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:21462eggNOG:ENOG410IZD4eggNOG:ENOG410YQU0EMBL:AB008269EMBL:BT029489EMBL:CP002688EnsemblPlants:AT5G60970
EnsemblPlants:AT5G60970.1entrez:836218GeneID:836218Genevisible:Q9FME3GO:GO:0003677GO:GO:0003700GO:GO:0005634
GO:GO:0006351GO:GO:0006355GO:GO:0009965GO:GO:0030154GO:GO:0045962GO:GO:0048366Gramene:AT5G60970.1
hmmpanther:PTHR31072hmmpanther:PTHR31072:SF24HOGENOM:HOG000154528InParanoid:Q9FME3InterPro:IPR005333InterPro:IPR017887KEGG:ath:AT5G60970
ncoils:CoilOMA:MSSNHDTPaxDb:Q9FME3Pfam:PF03634Pfam:Q9FME3Pfscan:PS51369PhylomeDB:Q9FME3
PRIDE:Q9FME3PRO:PR:Q9FME3PROSITE:PS51369ProteinModelPortal:Q9FME3Proteomes:UP000006548RefSeq:NP_200905.1STRING:3702.AT5G60970.1
TAIR:AT5G60970tair10-symbols:TCP5UniGene:At.70589UniProt:Q9FME3
Coordinates (TAIR10) chr5:-:24535570..24536652
Molecular Weight (calculated) 40165.00 Da
IEP (calculated) 6.83
GRAVY (calculated) -0.86
Length 360 amino acids
Sequence (TAIR10)
(BLAST)
001: MRSGECDEEE IQAKQERDQN QNHQVNLNHM LQQQQPSSVS SSRQWTSAFR NPRIVRVSRT FGGKDRHSKV CTVRGLRDRR IRLSVPTAIQ LYDLQDRLGL
101: SQPSKVIDWL LEAAKDDVDK LPPLQFPHGF NQMYPNLIFG NSGFGESPSS TTSTTFPGTN LGFLENWDLG GSSRTRARLT DTTTTQRESF DLDKGKWIKN
201: DENSNQDHQG FNTNHQQQFP LTNPYNNTSA YYNLGHLQQS LDQSGNNVTV AISNVAANNN NNLNLHPPSS SAGDGSQLFF GPTPPAMSSL FPTYPSFLGA
301: SHHHHVVDGA GHLQLFSSNS NTASQQHMMP GNTSLIRPFH HLMSSNHDTD HHSSDNESDS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)