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AT5G60940.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.983
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Transducin/WD40 repeat-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT3G49660.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:21459eggNOG:ENOG410XPWJeggNOG:KOG0640EMBL:AB008269EMBL:AF515696EMBL:AY084766EMBL:AY136384
EMBL:BT000184EMBL:CP002688EnsemblPlants:AT5G60940EnsemblPlants:AT5G60940.1EnsemblPlants:AT5G60940.2entrez:836215ExpressionAtlas:Q8L4J2
Gene3D:2.130.10.10GeneID:836215Genevisible:Q8L4J2GO:GO:0005634GO:GO:0006397hmmpanther:PTHR22840HOGENOM:HOG000234077
InParanoid:Q8L4J2IntAct:Q8L4J2InterPro:IPR001680InterPro:IPR015943InterPro:IPR017986InterPro:IPR019775KEGG:ath:AT5G60940
KO:K14406OMA:HAEPINDPaxDb:Q8L4J2Pfam:PF00400Pfam:Q8L4J2Pfscan:PS50082Pfscan:PS50294
PhylomeDB:Q8L4J2PRIDE:Q8L4J2PRO:PR:Q8L4J2PROSITE:PS00678PROSITE:PS50082PROSITE:PS50294ProteinModelPortal:Q8L4J2
Proteomes:UP000006548Reactome:R-ATH-72163Reactome:R-ATH-77595RefSeq:NP_200902.1RefSeq:NP_974972.1scanprosite:PS00678SMART:SM00320
SMR:Q8L4J2STRING:3702.AT5G60940.1SUPFAM:SSF50978TAIR:AT5G60940UniGene:At.29134UniProt:Q8L4J2
Coordinates (TAIR10) chr5:+:24523092..24525655
Molecular Weight (calculated) 47067.70 Da
IEP (calculated) 9.13
GRAVY (calculated) -0.25
Length 429 amino acids
Sequence (TAIR10)
(BLAST)
001: MGNSGDLEQA LQDGNIFRQL NALIVAHLRH HNLSQVASAV ASATMTPLNI EVPPNRLLEL VAKGLAAENN GTLRGVSSSV LLPSSYGSIT TPRTASIDFS
101: VNHAKGSSKT IPKHESKTLS EHKSVVRCAR FSPDGMFFAT GGADTSIKLF EVPKVKQMIS GDTQARPLIR TFYDHAEPIN DLDFHPRSTI LISSAKDNCI
201: KFFDFSKTTA KRAFKVFQDT HNVRSISFHP SGEFLLAGTD HPIPHLYDVN TYQCFLPSNF PDSGVSGAIN QVRYSSTGSI YITASKDGAI RLFDGVSAKC
301: VRSIGNAHGK SEVTSAVFTK DQRFVLSSGK DSTVKLWEIG SGRMVKEYLG AKRVKLRSQA IFNDTEEFVI SIDEASNEVV TWDARTADKV AKWPSNHNGA
401: PRWIEHSPVE SVFVTCGIDR SIRFWKESV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)