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AT5G60920.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 1.000
ASURE: plasma membrane
What is SUBAcon?
What is ASURE?
SUBAcon computations
Predictors External Curations
AmiGO : plasma membrane 11331607
AmiGO : plasma membrane 15849274
SwissProt : plasma membrane 16381842
TAIR : plasma membrane 17317660
TAIR : plasma membrane 15849274
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family
Curator
Summary (TAIR10)
Encodes a glycosylphosphatidylinositol-anchored protein localized primarily in the plasma membrane of the longitudinal sides of root cells. Necessary for oriented cell expansion in Arabidopsis. Cob mutants have abnormal roots that expand radially rather than longitudinally under certain growth conditions.
Computational
Description (TAIR10)
COBRA (COB); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to salt stress, multidimensional cell growth, cellulose microfibril organization; LOCATED IN: in 6 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl-phosphatidyl inositol-anchored, plant (InterPro:IPR006918), COBRA-like (InterPro:IPR017391); BEST Arabidopsis thaliana protein match is: COBRA-like protein 1 precursor (TAIR:AT3G02210.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:21457eggNOG:ENOG410IHWUeggNOG:ENOG410YAACEMBL:AB008269EMBL:AF319663EMBL:AJ006787EMBL:AY085712
EMBL:AY094402EMBL:BT001119EMBL:CP002688EnsemblPlants:AT5G60920EnsemblPlants:AT5G60920.1entrez:836213GeneID:836213
Genevisible:Q94KT8GO:GO:0005886GO:GO:0009505GO:GO:0009651GO:GO:0009825GO:GO:0009897GO:GO:0009930
GO:GO:0010215GO:GO:0016328GO:GO:0031225GO:GO:0046658Gramene:AT5G60920.1hmmpanther:PTHR31673hmmpanther:PTHR31673:SF3
HOGENOM:HOG000231433InParanoid:Q94KT8InterPro:IPR006918KEGG:ath:AT5G60920OMA:FQQFRHIPaxDb:Q94KT8Pfam:PF04833
Pfam:Q94KT8PhylomeDB:Q94KT8PIR:T52038PIRSF:PIRSF038122PRIDE:Q94KT8PRO:PR:Q94KT8ProDom:PD140986
Proteomes:UP000006548RefSeq:NP_568930.1STRING:3702.AT5G60920.1TAIR:AT5G60920tair10-symbols:COBTMHMM:TMhelixUniGene:At.21375
UniProt:Q94KT8
Coordinates (TAIR10) chr5:-:24511466..24513932
Molecular Weight (calculated) 51205.20 Da
IEP (calculated) 8.72
GRAVY (calculated) -0.17
Length 456 amino acids
Sequence (TAIR10)
(BLAST)
001: MESFFSRSTS IVSKLSFLAL WIVFLISSSS FTSTEAYDAL DPEGNITMKW DVMSWTPDGY VAVVTMFNFQ KYRHIQSPGW TLGWKWAKKE VIWSMVGAQT
101: TEQGDCSKYK GNIPHCCKKD PTVVDLLPGT PYNQQIANCC KGGVMNSWVQ DPATAASSFQ ISVGAAGTTN KTVRVPRNFT LMGPGPGYTC GPAKIVRPTK
201: FVTTDTRRTT QAMMTWNITC TYSQFLAQRT PTCCVSLSSF YNETIVGCPT CACGCQNNRT ESGACLDPDT PHLASVVSPP TKKGTVLPPL VQCTRHMCPI
301: RVHWHVKQNY KEYWRVKITI TNFNYRLNYT QWNLVAQHPN LDNITQIFSF NYKSLTPYAG LNDTAMLWGV KFYNDFLSEA GPLGNVQSEI LFRKDQSTFT
401: FEKGWAFPRR IYFNGDNCVM PPPDSYPFLP NGGSRSQFSF VAAVLLPLLV FFFFSA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)