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AT5G60910.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : AGAMOUS-like 8
Curator
Summary (TAIR10)
MADS box gene negatively regulated by APETALA1
Computational
Description (TAIR10)
AGAMOUS-like 8 (AGL8); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: positive regulation of flower development, maintenance of inflorescence meristem identity, fruit development; LOCATED IN: nucleus; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: K-box region and MADS-box transcription factor family protein (TAIR:AT1G69120.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:21456DIP:DIP-33794NeggNOG:COG5068eggNOG:KOG0014EMBL:AB008269EMBL:AF386929EMBL:AY072463
EMBL:CP002688EMBL:U33473EnsemblPlants:AT5G60910EnsemblPlants:AT5G60910.1entrez:836212ExpressionAtlas:Q38876GeneID:836212
Genevisible:Q38876GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0009908GO:GO:0009911
GO:GO:0010077GO:GO:0010154GO:GO:0030154hmmpanther:PTHR11945hmmpanther:PTHR11945:SF155HOGENOM:HOG000155301InParanoid:Q38876
IntAct:Q38876InterPro:IPR002100InterPro:IPR002487ncoils:CoilOMA:MHESISVPaxDb:Q38876Pfam:PF00319
Pfam:PF01486Pfam:Q38876Pfscan:PS50066Pfscan:PS51297PhylomeDB:Q38876PIR:S71208PRINTS:PR00404
PRO:PR:Q38876PROSITE:PS00350PROSITE:PS50066PROSITE:PS51297ProteinModelPortal:Q38876Proteomes:UP000006548RefSeq:NP_568929.1
scanprosite:PS00350SMART:SM00432SMR:Q38876STRING:3702.AT5G60910.1SUPFAM:SSF55455TAIR:AT5G60910tair10-symbols:AGL8
tair10-symbols:FULUniGene:At.5426UniProt:Q38876
Coordinates (TAIR10) chr5:-:24502736..24506013
Molecular Weight (calculated) 27538.00 Da
IEP (calculated) 9.86
GRAVY (calculated) -0.67
Length 242 amino acids
Sequence (TAIR10)
(BLAST)
001: MGRGRVQLKR IENKINRQVT FSKRRSGLLK KAHEISVLCD AEVALIVFSS KGKLFEYSTD SCMERILERY DRYLYSDKQL VGRDVSQSEN WVLEHAKLKA
101: RVEVLEKNKR NFMGEDLDSL SLKELQSLEH QLDAAIKSIR SRKNQAMFES ISALQKKDKA LQDHNNSLLK KIKEREKKTG QQEGQLVQCS NSSSVLLPQY
201: CVTSSRDGFV ERVGGENGGA SSLTEPNSLL PAWMLRPTTT NE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)