suba logo
AT5G60850.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : OBF binding protein 4
Curator
Summary (TAIR10)
Encodes a zinc finger protein.
Computational
Description (TAIR10)
OBF binding protein 4 (OBP4); CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: DOF zinc finger protein 1 (TAIR:AT1G51700.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IZYXeggNOG:ENOG410YQE9EMBL:AB015472EMBL:AF155817EMBL:AY056413EMBL:AY081709EMBL:AY085856
EMBL:CP002688EnsemblPlants:AT5G60850EnsemblPlants:AT5G60850.1entrez:836206GeneID:836206Genevisible:Q8LDR0GO:GO:0003700
GO:GO:0005634GO:GO:0006351GO:GO:0006355GO:GO:0044212GO:GO:0046872Gramene:AT5G60850.1hmmpanther:PTHR31992
HOGENOM:HOG000090954InParanoid:Q8LDR0InterPro:IPR003851KEGG:ath:AT5G60850OMA:DHAYWSQPaxDb:Q8LDR0Pfam:PF02701
Pfam:Q8LDR0Pfscan:PS50884PhylomeDB:Q8LDR0PRIDE:Q8LDR0PRO:PR:Q8LDR0ProDom:PD007478PROSITE:PS01361
PROSITE:PS50884Proteomes:UP000006548RefSeq:NP_200893.1scanprosite:PS01361STRING:3702.AT5G60850.1TAIR:AT5G60850tair10-symbols:OBP4
UniGene:At.20219UniProt:Q8LDR0
Coordinates (TAIR10) chr5:+:24480578..24481501
Molecular Weight (calculated) 32742.60 Da
IEP (calculated) 7.05
GRAVY (calculated) -0.64
Length 307 amino acids
Sequence (TAIR10)
(BLAST)
001: MQDIHDFSMN GVGGGGGGGG RFFGGGIGGG GGGDRRMRAH QNNILNHHQS LKCPRCNSLN TKFCYYNNYN LSQPRHFCKN CRRYWTKGGV LRNVPVGGGC
101: RKAKRSKTKQ VPSSSSADKP TTTQDDHHVE EKSSTGSHSS SESSSLTASN STTVAAVSVT AAAEVASSVI PGFDMPNMKI YGNGIEWSTL LGQGSSAGGV
201: FSEIGGFPAV SAIETTPFGF GGKFVNQDDH LKLEGETVQQ QQFGDRTAQV EFQGRSSDPN MGFEPLDWGS GGGDQTLFDL TSTVDHAYWS QSQWTSSDQD
301: QSGLYLP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)