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AT5G60690.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein
Curator
Summary (TAIR10)
REVOLUTA regulates meristem initiation at lateral positions. a member of a small homeodomain-leucine zipper family. Has overlapping functions with PHAVOLUTA and PHABULOSA.
Computational
Description (TAIR10)
REVOLUTA (REV); CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Lipid-binding START (InterPro:IPR002913), MEKHLA (InterPro:IPR013978), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (TAIR:AT2G34710.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IFHBeggNOG:ENOG410ZJBVEMBL:AB005246EMBL:AF188994EMBL:AF233592EMBL:AK229564EMBL:AY170127
EMBL:CP002688EMBL:EF598684EMBL:EF598685EMBL:EF598686EMBL:EF598687EMBL:EF598688EMBL:EF598689
EMBL:EF598690EMBL:EF598691EMBL:EF598692EMBL:EF598693EMBL:EF598694EMBL:EF598695EMBL:EF598696
EMBL:EF598697EMBL:EF598698EMBL:EF598699EMBL:EF598700EMBL:EF598701EMBL:EF598702EMBL:EF598703
EMBL:EF598704EMBL:EF598705EMBL:EF598706EnsemblPlants:AT5G60690EnsemblPlants:AT5G60690.1entrez:836190Gene3D:1.10.10.60
Gene3D:3.30.530.20GeneID:836190Genevisible:Q9SE43GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0008289
GO:GO:0009855GO:GO:0009944GO:GO:0009956GO:GO:0010014GO:GO:0010051GO:GO:0010089GO:GO:0030154
GO:GO:0044212Gramene:AT5G60690.1hmmpanther:PTHR24326hmmpanther:PTHR24326:SF279InterPro:IPR001356InterPro:IPR002913InterPro:IPR009057
InterPro:IPR013978InterPro:IPR023393KEGG:ath:AT5G60690KO:K09338ncoils:CoilOMA:LEVFTMIPaxDb:Q9SE43
Pfam:PF00046Pfam:PF01852Pfam:PF08670Pfam:Q9SE43Pfscan:PS50071Pfscan:PS50848PhylomeDB:Q9SE43
PRIDE:Q9SE43PRO:PR:Q9SE43PROSITE:PS50071PROSITE:PS50848ProteinModelPortal:Q9SE43Proteomes:UP000006548RefSeq:NP_200877.1
SMART:SM00234SMART:SM00389SMR:Q9SE43STRING:3702.AT5G60690.1SUPFAM:SSF46689SUPFAM:SSF55961TAIR:AT5G60690
tair10-symbols:IFLtair10-symbols:IFL1tair10-symbols:REVUniGene:At.49201UniGene:At.7238UniProt:Q9SE43
Coordinates (TAIR10) chr5:+:24397734..24401933
Molecular Weight (calculated) 92443.30 Da
IEP (calculated) 5.85
GRAVY (calculated) -0.11
Length 842 amino acids
Sequence (TAIR10)
(BLAST)
001: MEMAVANHRE RSSDSMNRHL DSSGKYVRYT AEQVEALERV YAECPKPSSL RRQQLIRECS ILANIEPKQI KVWFQNRRCR DKQRKEASRL QSVNRKLSAM
101: NKLLMEENDR LQKQVSQLVC ENGYMKQQLT TVVNDPSCES VVTTPQHSLR DANSPAGLLS IAEETLAEFL SKATGTAVDW VQMPGMKPGP DSVGIFAISQ
201: RCNGVAARAC GLVSLEPMKI AEILKDRPSW FRDCRSLEVF TMFPAGNGGT IELVYMQTYA PTTLAPARDF WTLRYTTSLD NGSFVVCERS LSGSGAGPNA
301: ASASQFVRAE MLSSGYLIRP CDGGGSIIHI VDHLNLEAWS VPDVLRPLYE SSKVVAQKMT ISALRYIRQL AQESNGEVVY GLGRQPAVLR TFSQRLSRGF
401: NDAVNGFGDD GWSTMHCDGA EDIIVAINST KHLNNISNSL SFLGGVLCAK ASMLLQNVPP AVLIRFLREH RSEWADFNVD AYSAATLKAG SFAYPGMRPT
501: RFTGSQIIMP LGHTIEHEEM LEVVRLEGHS LAQEDAFMSR DVHLLQICTG IDENAVGACS ELIFAPINEM FPDDAPLVPS GFRVIPVDAK TGDVQDLLTA
601: NHRTLDLTSS LEVGPSPENA SGNSFSSSSS RCILTIAFQF PFENNLQENV AGMACQYVRS VISSVQRVAM AISPSGISPS LGSKLSPGSP EAVTLAQWIS
701: QSYSHHLGSE LLTIDSLGSD DSVLKLLWDH QDAILCCSLK PQPVFMFANQ AGLDMLETTL VALQDITLEK IFDESGRKAI CSDFAKLMQQ GFACLPSGIC
801: VSTMGRHVSY EQAVAWKVFA ASEENNNNLH CLAFSFVNWS FV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)