suba logo
AT5G60670.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ribosomal protein L11 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ribosomal protein L11 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, cytosolic large ribosomal subunit; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L11, C-terminal domain (InterPro:IPR020783), Ribosomal protein L11, N-terminal domain (InterPro:IPR020784), Ribosomal protein L11, conserved site (InterPro:IPR020785), Ribosomal protein L11 (InterPro:IPR000911); BEST Arabidopsis thaliana protein match is: Ribosomal protein L11 family protein (TAIR:AT3G53430.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:21432eggNOG:COG0080eggNOG:KOG0886EMBL:AB005246EMBL:AY039614EMBL:AY078025EMBL:AY088164
EMBL:CP002688EnsemblPlants:AT5G60670EnsemblPlants:AT5G60670.1entrez:836188Gene3D:1.10.10.250Gene3D:3.30.1550.10GeneID:836188
Genevisible:Q9FF52GO:GO:0003735GO:GO:0005829GO:GO:0006412GO:GO:0019843GO:GO:0022625Gramene:AT5G60670.1
HAMAP:MF_00736hmmpanther:PTHR11661hmmpanther:PTHR11661:SF6HOGENOM:HOG000082125InterPro:IPR000911InterPro:IPR020783InterPro:IPR020784
InterPro:IPR020785KEGG:ath:AT5G60670KO:K02870MINT:MINT-8063118OMA:KIVNLRCPANTHER:PTHR11661PaxDb:Q9FF52
Pfam:PF00298Pfam:PF03946Pfam:Q9FF52PhylomeDB:Q9FF52PRIDE:Q9FF52PRO:PR:Q9FF52PROSITE:PS00359
ProteinModelPortal:Q9FF52Proteomes:UP000006548Reactome:R-ATH-156827Reactome:R-ATH-1799339Reactome:R-ATH-72689Reactome:R-ATH-72706Reactome:R-ATH-975956
Reactome:R-ATH-975957RefSeq:NP_200875.1scanprosite:PS00359SMART:SM00649SMR:Q9FF52STRING:3702.AT5G60670.1SUPFAM:SSF46906
SUPFAM:SSF54747TAIR:AT5G60670UniGene:At.22910UniProt:Q9FF52
Coordinates (TAIR10) chr5:-:24381066..24381566
Molecular Weight (calculated) 17843.80 Da
IEP (calculated) 9.54
GRAVY (calculated) -0.28
Length 166 amino acids
Sequence (TAIR10)
(BLAST)
001: MPPKLDPSQI VDVYVRVTGG EVGAASSLAP KIGPLGLAPK KIGEDIAKET AKEWKGLRVT VKLTVQNRQA KVTVVPSAAA LVIKALKEPE RDRKKVKNIK
101: HNGNISFDDV IEIAKIMRPR SIAKELSGTV KEILGTCVSV GCTVDGKDPK DLQEEINSGD IDIPNE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)