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AT5G60640.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
endoplasmic reticulum 1.000
What is SUBAcon?
Predictors External Curations
AmiGO : endoplasmic reticulum 16618929
AmiGO : mitochondrion 12492832
AmiGO : mitochondrion 14671022
TAIR : plastid 15028209
TAIR : plasma membrane 17151019
TAIR : endoplasmic reticulum 16618929
TAIR : mitochondrion 12492832
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24970193 (2013): endoplasmic reticulum
  • PMID:18931141 (2008): endoplasmic reticulum
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:31023727 (2019): mitochondrion
  • PMID:30962257 (2019): plastid
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30447334 (2019): plasma membrane
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27943495 (2017): mitochondrion
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25641898 (2015): plasma membrane
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22923678 (2012): endoplasmic reticulum
  • PMID:22550958 (2012): plastid
  • PMID:22215637 (2012): plasma membrane
  • PMID:21433285 (2011): plasma membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:17151019 (2007): plant-type vacuole
  • PMID:16618929 (2006): endoplasmic reticulum
  • PMID:15028209 (2004): plastid
  • PMID:14671022 (2004): mitochondrion
  • PMID:12492832 (2002): mitochondrion
FP Images

Arabidopsis cell culture (peroxisomal marker)

At5g-GFP-60640
(full-length)
RFP-peroxisomal markeroverlay

Images by John Bussel
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : PDI-like 1-4
Curator
Summary (TAIR10)
Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. Unlike several other PDI family members, transcript levels for this gene are not up-regulated in response to three different chemical inducers of ER stress (dithiothreitol, beta-mercaptoethanol, and tunicamycin). However, the level of transcripts for this gene is slightly elevated in atbzip60 mutants.
Computational
Description (TAIR10)
PDI-like 1-4 (PDIL1-4); FUNCTIONS IN: protein disulfide isomerase activity; INVOLVED IN: response to oxidative stress; LOCATED IN: mitochondrion, endoplasmic reticulum, plasma membrane, chloroplast; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Disulphide isomerase (InterPro:IPR005788), Thioredoxin domain (InterPro:IPR013766), Thioredoxin, conserved site (InterPro:IPR017937), Thioredoxin-like subdomain (InterPro:IPR006662), Protein disulphide isomerase (InterPro:IPR005792), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: PDI-like 1-3 (TAIR:AT3G54960.1); Has 27268 Blast hits to 18617 proteins in 2977 species: Archae - 300; Bacteria - 12440; Metazoa - 5251; Fungi - 1704; Plants - 2409; Viruses - 19; Other Eukaryotes - 5145 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G60640-MONOMERBioCyc:ARA:GQT-84-MONOMERBioCyc:ARA:GQT-85-MONOMERBioGrid:21429
EC:5.3.4.1eggNOG:COG0526eggNOG:KOG0190EMBL:AB005246
EMBL:AY087725EMBL:BT001994EMBL:BT008359EMBL:CP002688
EnsemblPlants:AT5G60640EnsemblPlants:AT5G60640.1entrez:836185ExpressionAtlas:Q9FF55
Gene3D:3.40.30.10GeneID:836185Genevisible:Q9FF55GO:GO:0003756
GO:GO:0005576GO:GO:0005618GO:GO:0005634GO:GO:0005739
GO:GO:0005774GO:GO:0005783GO:GO:0005788GO:GO:0006457
GO:GO:0006979GO:GO:0009507GO:GO:0034976GO:GO:0045454
hmmpanther:PTHR18929hmmpanther:PTHR18929:SF74HOGENOM:HOG000162459InParanoid:Q9FF55
InterPro:IPR005788InterPro:IPR005792InterPro:IPR012336InterPro:IPR013766
InterPro:IPR017937OMA:IPEDNEGPaxDb:Q9FF55Pfam:PF00085
Pfam:PF13848Pfam:Q9FF55Pfscan:PS51352PhylomeDB:Q9FF55
PRIDE:Q9FF55PRO:PR:Q9FF55PROSITE:PS00014PROSITE:PS00194
PROSITE:PS51352ProteinModelPortal:Q9FF55Proteomes:UP000006548RefSeq:NP_851234.1
scanprosite:PS00194SMR:Q9FF55STRING:3702.AT5G60640.1SUPFAM:SSF52833
SwissPalm:Q9FF55TAIR:AT5G60640tair10-symbols:ATPDI2tair10-symbols:ATPDIL1-4
tair10-symbols:PDI2tair10-symbols:PDIL1-4TIGRfam:TIGR01126TIGRfam:TIGR01130
TIGRFAMs:TIGR01126TIGRFAMs:TIGR01130UniGene:At.22422UniProt:Q9FF55
Coordinates (TAIR10) chr5:-:24371141..24373993
Molecular Weight (calculated) 66360.30 Da
IEP (calculated) 4.22
GRAVY (calculated) -0.43
Length 597 amino acids
Sequence (TAIR10)
(BLAST)
001: MAFRVLLLFS LTALLIFSAV SPSFAASSSD DVDDEDLSFL EDLKEDDVPG ADSLSSSTGF DEFEGGEEED PDMYNDDDDE EGDFSDLGNP DSDPLPTPEI
101: DEKDVVVIKE RNFTDVIENN QYVLVEFYAP WCGHCQSLAP EYAAAATELK EDGVVLAKID ATEENELAQE YRVQGFPTLL FFVDGEHKPY TGGRTKETIV
201: TWVKKKIGPG VYNLTTLDDA EKVLTSGNKV VLGYLNSLVG VEHDQLNAAS KAEDDVNFYQ TVNPDVAKMF HLDPESKRPA LVLVKKEEEK ISHFDGEFVK
301: SALVSFVSAN KLALVSVFTR ETAPEIFESA IKKQLLLFVT KNESEKVLTE FQEAAKSFKG KLIFVSVDLD NEDYGKPVAE YFGVSGNGPK LIGYTGNEDP
401: KKYFFDGEIQ SDKIKIFGED FLNDKLKPFY KSDPIPEKND EDVKIVVGDN FDEIVLDDSK DVLLEVYAPW CGHCQALEPM YNKLAKHLRS IDSLVITKMD
501: GTTNEHPKAK AEGFPTILFF PAGNKTSEPI TVDTDRTVVA FYKFLRKHAT IPFKLEKPAS TESPKTAEST PKVETTETKE SPDSTTKSSQ SDSKDEL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)