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AT5G60590.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : DHBP synthase RibB-like alpha/beta domain
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
DHBP synthase RibB-like alpha/beta domain; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DHBP synthase RibB-like alpha/beta domain (InterPro:IPR017945), Sua5/YciO/YrdC, N-terminal (InterPro:IPR006070); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0009eggNOG:KOG3051EMBL:AF378867EMBL:AY050466EMBL:CP002688EnsemblPlants:AT5G60590EnsemblPlants:AT5G60590.1
entrez:836180ExpressionAtlas:Q93W92Gene3D:3.90.870.10GeneID:836180GO:GO:0003725Gramene:AT5G60590.1hmmpanther:PTHR17490
IntAct:Q93W92InterPro:IPR006070InterPro:IPR017945KEGG:ath:AT5G60590Pfam:PF01300Pfscan:PS51163PhylomeDB:Q93W92
PROSITE:PS51163Proteomes:UP000006548RefSeq:NP_568924.1SMR:Q93W92STRING:3702.AT5G60590.2SUPFAM:SSF55821TAIR:AT5G60590
UniGene:At.19096UniProt:Q93W92
Coordinates (TAIR10) chr5:+:24357066..24357952
Molecular Weight (calculated) 17941.10 Da
IEP (calculated) 9.09
GRAVY (calculated) 0.16
Length 164 amino acids
Sequence (TAIR10)
(BLAST)
001: MNLSTRLAEK LPGILPAPSS PLLRKGVSEL RCFSIANQSR RLRWGLQKKM VWSLERAETC VVSKSCLVHP ATEAYAQEAI EAIKSEKVIA VPTDTLYGFA
101: CDACSLEAVS RIYEIKGRKL TSPLAICVGD VLDIKRVATT SHLPHGLLDS LLPGPVTLVL QRVF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)