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AT5G60550.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.861
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : geminivirus rep interacting kinase 2
Curator
Summary (TAIR10)
Encodes a geminivirus Rep interacting kinase (GRIK; GRIK1/AT3G45240, GRIK2/AT5G60550). GRIKs are SnRK1 (SNF1-related kinases) activating kinases. Both GRIKs specifically bind to the SnRK1 catalytic subunit and phosphorylate the equivalent threonine residue in its activation loop in vitro.
Computational
Description (TAIR10)
geminivirus rep interacting kinase 2 (GRIK2); CONTAINS InterPro DOMAIN/s: Calcium/calmodulin-dependent protein kinase kinase (InterPro:IPR020657), Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636); BEST Arabidopsis thaliana protein match is: geminivirus rep interacting kinase 1 (TAIR:AT3G45240.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G60550-MONOMEREC:2.7.11.1eggNOG:ENOG410YHHFeggNOG:KOG0585
EMBL:AB011483EMBL:AM489730EMBL:AY099846EMBL:BT020486
EMBL:BT025976EMBL:CP002688EnsemblPlants:AT5G60550EnsemblPlants:AT5G60550.1
entrez:836176GeneID:836176Genevisible:Q5HZ38GO:GO:0004672
GO:GO:0004674GO:GO:0005524GO:GO:0006468GO:GO:0009615
GO:GO:0016032GO:GO:0016301Gramene:AT5G60550.1hmmpanther:PTHR24347
hmmpanther:PTHR24347:SF1HOGENOM:HOG000233016InParanoid:Q5HZ38IntAct:Q5HZ38
InterPro:IPR000719InterPro:IPR008271InterPro:IPR011009InterPro:IPR017441
InterPro:IPR020636iPTMnet:Q5HZ38KEGG:ath:AT5G60550KO:K07359
OMA:NEYIREYPANTHER:PTHR24347PaxDb:Q5HZ38Pfam:PF00069
Pfam:Q5HZ38Pfscan:PS50011PhylomeDB:Q5HZ38PRIDE:Q5HZ38
PRO:PR:Q5HZ38PROSITE:PS00107PROSITE:PS00108PROSITE:PS50011
ProteinModelPortal:Q5HZ38Proteomes:UP000006548Reactome:R-ATH-442717RefSeq:NP_200863.2
scanprosite:PS00107scanprosite:PS00108SMART:SM00220SMR:Q5HZ38
STRING:3702.AT5G60550.1SUPFAM:SSF56112TAIR:AT5G60550tair10-symbols:ATSNAK1
tair10-symbols:GRIK2UniGene:At.29153UniProt:Q5HZ38
Coordinates (TAIR10) chr5:+:24340135..24342356
Molecular Weight (calculated) 45654.90 Da
IEP (calculated) 4.70
GRAVY (calculated) -0.42
Length 407 amino acids
Sequence (TAIR10)
(BLAST)
001: MFRDSFLFAR TIGCFGCFGS SGSRNQQSPK PYDDDTHSCD SDVTSTARGE EEEDEEEVEQ KSRSKRSEEI LKYRLDNGLI CRHIPVRETN ELIRGEDENG
101: DKTINEYVRV CKIGSGSYGK VVLYRSTLDG QYYAIKAFHK SHLLRLRVAP SETAMSDVLR EVMIMKILEH PNIVNLIEVI DDPETDHFYM VLEYVDGKWV
201: YDGSGPPGAL GEKTARKYLR DIVTGLMYLH AHDVIHGDIK PDNLLVTSSG TVKIGDFSVS QVFKDDDDQL RRSPGTPVFT APECCLVSGI TYSGRAADTW
301: AVGVTLYCMI LGQYPFLADT LQDTYDKIVN NPLIIPDGLN PLLRDLIEGL LCKDPSQRMT LKNVSEHPWV IGEDGHVPEY FCWCKRNAAS KIEEGEANGI
401: SETSDPN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)