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AT5G60530.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : late embryogenesis abundant protein-related / LEA protein-related
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
late embryogenesis abundant protein-related / LEA protein-related; FUNCTIONS IN: molecular_function unknown; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Root cap (InterPro:IPR009646); BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant (LEA) protein-related (TAIR:AT5G60520.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JVNUeggNOG:ENOG41105RCEMBL:AB011483EMBL:BT000598
EMBL:CP002688EnsemblPlants:AT5G60530EnsemblPlants:AT5G60530.1entrez:836174
GeneID:836174Gramene:AT5G60530.1hmmpanther:PTHR31656hmmpanther:PTHR31656:SF8
IntAct:Q9FKJ4InterPro:IPR009646KEGG:ath:AT5G60530ncoils:Coil
OMA:DNNLQINPfam:PF06830PhylomeDB:Q9FKJ4Proteomes:UP000006548
RefSeq:NP_200861.1STRING:3702.AT5G60530.1TAIR:AT5G60530TMHMM:TMhelix
UniGene:At.24336UniProt:Q9FKJ4
Coordinates (TAIR10) chr5:-:24334197..24335685
Molecular Weight (calculated) 50087.30 Da
IEP (calculated) 8.93
GRAVY (calculated) -1.04
Length 439 amino acids
Sequence (TAIR10)
(BLAST)
001: MERRQSYVLV ALIGLLLLTD IVIAQSDGGK GNGNNGKGNE VQVDKGKGDN GKSNGNGPKD KEQEKKDKEK AAKDKKEKEK KDKEEKEKKD KERKEKEKKD
101: KLEKEKKDKE RKEKERKEKE RKAKEKKDKE ESEAAARYRI LSPLPTGQEQ AMCQGRGSCY YKTLVCPGEC PKRKPTKNKN TKGCFIDCTN KCEATCKWRK
201: TNCNGYGSLC YDPRFVGGDG VMFYFHGSKG GNFAIVSDNN LQINAHFIGT RPVGRTRDFT WVQALNVMFE NHKLVITANR VNQWDETSDA FTIRYDGELI
301: TLPEDEQSEW REISGQKKDI IIERTDERNS VRVLVSDLVQ MDIRVRPIGK EENRVHNYQL PQDDAFAHLE TQFKFLDLSE LVEGVLGKTY RPDYVSSAKT
401: GVPMPVLGGE DKYQTPSLFS PTCRLCRFKP QEESLSADI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)