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AT5G60450.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : auxin response factor 4
Curator
Summary (TAIR10)
Encodes a member of the ARF family of transcription factors which mediate auxin responses. ARF4 appears to have redundant function with ETT(ARF3) in specifying abaxial cell identity.
Computational
Description (TAIR10)
auxin response factor 4 (ARF4); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: vegetative phase change, regulation of transcription, DNA-dependent, abaxial cell fate specification; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), Transcriptional factor B3 (InterPro:IPR003340), AUX/IAA protein (InterPro:IPR003311), Auxin response factor (InterPro:IPR010525); BEST Arabidopsis thaliana protein match is: Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (TAIR:AT2G33860.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:21410eggNOG:ENOG410IKM1eggNOG:ENOG4111D9HEMBL:AB011483EMBL:AF013466EMBL:AF344313EMBL:AY080832
EMBL:AY113977EMBL:CP002688EnsemblPlants:AT5G60450EnsemblPlants:AT5G60450.1entrez:836166Gene3D:2.40.330.10GeneID:836166
Genevisible:Q9ZTX9GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0009734GO:GO:0010050
GO:GO:0010158Gramene:AT5G60450.1hmmpanther:PTHR31384hmmpanther:PTHR31384:SF20HOGENOM:HOG000241141InParanoid:Q9ZTX9IntAct:Q9ZTX9
InterPro:IPR000270InterPro:IPR003340InterPro:IPR010525InterPro:IPR015300KEGG:ath:AT5G60450OMA:EICPLRSPaxDb:Q9ZTX9
Pfam:PF02309Pfam:PF02362Pfam:PF06507Pfam:Q9ZTX9Pfscan:PS50863Pfscan:PS51745PhylomeDB:Q9ZTX9
PRIDE:Q9ZTX9PRO:PR:Q9ZTX9PROSITE:PS50863PROSITE:PS51745ProteinModelPortal:Q9ZTX9Proteomes:UP000006548RefSeq:NP_200853.1
SMART:SM01019SMR:Q9ZTX9STRING:3702.AT5G60450.1SUPFAM:SSF101936SUPFAM:SSF54277TAIR:AT5G60450tair10-symbols:ARF4
UniGene:At.6797UniProt:Q9ZTX9
Coordinates (TAIR10) chr5:-:24308558..24312187
Molecular Weight (calculated) 87288.90 Da
IEP (calculated) 6.37
GRAVY (calculated) -0.47
Length 788 amino acids
Sequence (TAIR10)
(BLAST)
001: MEFDLNTEIA EVEEEENDDV GVGVGGGTRI DKGRLGISPS SSSSCSSGSS SSSSSTGSAS SIYSELWHAC AGPLTCLPKK GNVVVYFPQG HLEQDAMVSY
101: SSPLEIPKFD LNPQIVCRVV NVQLLANKDT DEVYTQVTLL PLQEFSMLNG EGKEVKELGG EEERNGSSSV KRTPHMFCKT LTASDTSTHG GFSVPRRAAE
201: DCFAPLDYKQ QRPSQELIAK DLHGVEWKFR HIYRGQPRRH LLTTGWSIFV SQKNLVSGDA VLFLRDEGGE LRLGIRRAAR PRNGLPDSII EKNSCSNILS
301: LVANAVSTKS MFHVFYSPRA THAEFVIPYE KYITSIRSPV CIGTRFRMRF EMDDSPERRC AGVVTGVCDL DPYRWPNSKW RCLLVRWDES FVSDHQERVS
401: PWEIDPSVSL PHLSIQSSPR PKRPWAGLLD TTPPGNPITK RGGFLDFEES VRPSKVLQGQ ENIGSASPSQ GFDVMNRRIL DFAMQSHANP VLVSSRVKDR
501: FGEFVDATGV NPACSGVMDL DRFPRVLQGQ EICSLKSFPQ FAGFSPAAAP NPFAYQANKS SYYPLALHGI RSTHVPYQNP YNAGNQSSGP PSRAINFGEE
601: TRKFDAQNEG GLPNNVTADL PFKIDMMGKQ KGSELNMNAS SGCKLFGFSL PVETPASKPQ SSSKRICTKV HKQGSQVGRA IDLSRLNGYD DLLMELERLF
701: NMEGLLRDPE KGWRILYTDS ENDMMVVGDD PWHDFCNVVW KIHLYTKEEV ENANDDNKSC LEQAALMMEA SKSSSVSQPD SSPTITRV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)