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AT5G60440.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : AGAMOUS-like 62
Curator
Summary (TAIR10)
AGL62 encodes a Type I MADS domain protein that likely functions as a transcription factor. It is expressed AGL62 is expressed exclusively in the endosperm. AGL62 supresses suppresses cellularization during the syncytial phase of endosperm development.
Computational
Description (TAIR10)
AGAMOUS-like 62 (AGL62); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: cellularization of endosperm, endosperm development; LOCATED IN: nucleus; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: MADS-box transcription factor family protein (TAIR:AT4G36590.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:21409eggNOG:COG5068eggNOG:KOG0014EMBL:AB011483EMBL:AY141236EMBL:CP002688EMBL:EU493093
EnsemblPlants:AT5G60440EnsemblPlants:AT5G60440.1entrez:836165GeneID:836165Genevisible:Q9FKK2GO:GO:0003677GO:GO:0003700
GO:GO:0005634GO:GO:0006351GO:GO:0009960hmmpanther:PTHR11945hmmpanther:PTHR11945:SF185HOGENOM:HOG000238700InParanoid:Q9FKK2
IntAct:Q9FKK2InterPro:IPR002100KEGG:ath:AT5G60440ncoils:CoilOMA:NISEYEHPaxDb:Q9FKK2Pfam:PF00319
Pfam:Q9FKK2Pfscan:PS50066PhylomeDB:Q9FKK2PRINTS:PR00404PRO:PR:Q9FKK2PROSITE:PS50066ProteinModelPortal:Q9FKK2
Proteomes:UP000006548RefSeq:NP_200852.1SMART:SM00432SMR:Q9FKK2STRING:3702.AT5G60440.1SUPFAM:SSF55455TAIR:AT5G60440
tair10-symbols:AGL62UniGene:At.29160UniProt:Q9FKK2
Coordinates (TAIR10) chr5:+:24306329..24307520
Molecular Weight (calculated) 34589.70 Da
IEP (calculated) 9.18
GRAVY (calculated) -0.85
Length 299 amino acids
Sequence (TAIR10)
(BLAST)
001: MVKKSKGRQK IEMVKMKNES NLQVTFSKRR SGLFKKASEL CTLCGAEVAI VVFSPGRKVF SFGHPNVDSV IDRFINNNPL PPHQHNNMQL RETRRNSIVQ
101: DLNNHLTQVL SQLETEKKKY DELKKIREKT KALGNWWEDP VEELALSQLE GFKGNLENLK KVVTVEASRF FQANVPNFYV GSSSNNAAFG IDDGSHINPD
201: MDLFSQRRMM DINAFNYNQN QIHPNHALPP FGNNAYGINE GFVPEYNVNF RPEYNPNQNQ IQNQNQVQIQ IQNQSFKREN ISEYEHHHGY PPQSRSDYY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)