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AT5G60360.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
vacuole 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:16230331 (2005): plant-type vacuole
  • PMID:15722471 (2005): plant-type vacuole
  • PMID:12724533 (2003): plant-type vacuole
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:18998720 (2009): extracellular region
  • PMID:15539469 (2004): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : aleurain-like protease
Curator
Summary (TAIR10)
Encodes a senescence-associated thiol protease.
Computational
Description (TAIR10)
aleurain-like protease (ALP); FUNCTIONS IN: cysteine-type peptidase activity; INVOLVED IN: response to ethylene stimulus, proteolysis, aging; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C1A, papain (InterPro:IPR013128), Proteinase inhibitor I29, cathepsin propeptide (InterPro:IPR013201), Peptidase C1A, papain C-terminal (InterPro:IPR000668), Peptidase, cysteine peptidase active site (InterPro:IPR000169); BEST Arabidopsis thaliana protein match is: Cysteine proteinases superfamily protein (TAIR:AT3G45310.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:COG4870eggNOG:KOG1543EMBL:AK317029EMBL:AK317496EnsemblPlants:AT5G60360EnsemblPlants:AT5G60360.1entrez:836158
ExpressionAtlas:B9DG56GeneID:836158GO:GO:0008234Gramene:AT5G60360.1hmmpanther:PTHR12411hmmpanther:PTHR12411:SF336InterPro:IPR000169
InterPro:IPR000668InterPro:IPR013128InterPro:IPR013201InterPro:IPR025660InterPro:IPR025661merops:C01.163PANTHER:PTHR12411
Pfam:PF00112Pfam:PF08246Pfam:Q8H166PhylomeDB:B9DG56PRINTS:PR00705PROSITE:PS00139PROSITE:PS00639
PROSITE:PS00640RefSeq:NP_568921.1scanprosite:PS00139scanprosite:PS00639scanprosite:PS00640SMART:SM00645SMART:SM00848
SMR:B9DG56STRING:3702.AT5G60360.3SUPFAM:SSF54001TAIR:AT5G60360tair10-symbols:AALPtair10-symbols:ALPtair10-symbols:SAG2
TMHMM:TMhelixUniGene:At.25414UniProt:B9DG56UniProt:Q8H166
Coordinates (TAIR10) chr5:+:24280044..24282152
Molecular Weight (calculated) 38961.10 Da
IEP (calculated) 6.70
GRAVY (calculated) -0.19
Length 358 amino acids
Sequence (TAIR10)
(BLAST)
001: MSAKTILSSV VLVVLVAASA AANIGFDESN PIRMVSDGLR EVEESVSQIL GQSRHVLSFA RFTHRYGKKY QNVEEMKLRF SIFKENLDLI RSTNKKGLSY
101: KLGVNQFADL TWQEFQRTKL GAAQNCSATL KGSHKVTEAA LPETKDWRED GIVSPVKDQG GCGSCWTFST TGALEAAYHQ AFGKGISLSE QQLVDCAGAF
201: NNYGCNGGLP SQAFEYIKSN GGLDTEKAYP YTGKDETCKF SAENVGVQVL NSVNITLGAE DELKHAVGLV RPVSIAFEVI HSFRLYKSGV YTDSHCGSTP
301: MDVNHAVLAV GYGVEDGVPY WLIKNSWGAD WGDKGYFKME MGKNMCGIAT CASYPVVA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)