AT5G60210.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : ROP interactive partner 5 | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
ROP interactive partner 5 (RIP5); LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: ROP interactive partner 3 (TAIR:AT2G37080.1); Has 98994 Blast hits to 51471 proteins in 2911 species: Archae - 1324; Bacteria - 16057; Metazoa - 45939; Fungi - 8665; Plants - 5713; Viruses - 271; Other Eukaryotes - 21025 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:24243529..24245889 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 63715.90 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.85 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.87 | ||||||||||||||||||||||||||||||||||||||||
| Length | 564 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MQTQKARNGS PDVPKKVSPR AARPLKIAAL EPESSSSPIS ATNRTPKDKS PNVLNRRSPR SPVSEKKRPS RITELELLVS QLQEELKKAK DQISVSETSK 101: KQAEQEAEES RKQLQEVSSK LEESQNQFVE TSALEEETDK TGSLVFQSVS QECDWEFSAT AGERAGLAAV AHEIRQLKLQ IEMVASSEAG HVKQAELYNS 201: EVQLLRGNLM DTLFHVENFR NQLKDCEISE AETEALATET LRQLENAKKA VEELKSDGTK AVESYKKMAV ELEQSKSRMV WLEALVNKLQ NNPADLENHE 301: ILLKDYESLR RGESNEMDEE VSSLRCEVER LRAALEASDK KDQEGNVEAS SRLRIQAELQ SELKIAKSEI DELKARLMDK ETELQFISEE RDNFSMKLMK 401: NQKEIDVEAE LKKLREAIEN LKADLMDKET ELQIVSDENE TLKSDIHKSE TDVQDAFLKL GIAMEEADKS SKKAVRVTEQ LEATQASNSE METELRKLKV 501: QSNQWRKAAE AATAMLSAGN NGKFAENYNQ TNSPYSEDID DELTKKKNGN VLKKIGVLWK KPQK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)