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AT5G60200.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : TARGET OF MONOPTEROS 6
Curator
Summary (TAIR10)
Encodes a Dof-type transcription factor.
Computational
Description (TAIR10)
TARGET OF MONOPTEROS 6 (TMO6); CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: Dof-type zinc finger DNA-binding family protein (TAIR:AT3G45610.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IY2XeggNOG:ENOG410YZTIEMBL:AB493803EMBL:AK228185EnsemblPlants:AT5G60200EnsemblPlants:AT5G60200.1entrez:836142
ExpressionAtlas:Q0WRV9GeneID:836142GO:GO:0003677GO:GO:0006355Gramene:AT5G60200.1hmmpanther:PTHR31992InterPro:IPR003851
KEGG:ath:AT5G60200OMA:EPASHDGPfam:PF02701Pfam:Q84TE9Pfscan:PS50884PhylomeDB:Q0WRV9ProDom:PD007478
PROSITE:PS01361PROSITE:PS50884RefSeq:NP_568920.1scanprosite:PS01361STRING:3702.AT5G60200.1TAIR:AT5G60200tair10-symbols:TMO6
UniGene:At.29177UniProt:Q0WRV9UniProt:Q84TE9
Coordinates (TAIR10) chr5:+:24241078..24241951
Molecular Weight (calculated) 28202.90 Da
IEP (calculated) 8.77
GRAVY (calculated) -0.74
Length 257 amino acids
Sequence (TAIR10)
(BLAST)
001: MDHLLQHQDV FGNYNKAREA MGLSYSSNPT PLDNDQKKPS PATAVTRPQP PELALRCPRC DSTNTKFCYY NNYSLTQPRY FCKSCRRYWT KGGTLRNIPV
101: GGGCRKNKRS TSSAARSLRT TPEPASHDGK VFSAAGFNGY SNNEHIDLSL AFALLNKQHP GSSSQLGFHS ELGSSHQSDM EGMFGTSQQK ENATYAFGNG
201: SSGLGDPSRV LWGFPWQMNG ESFGMMNIGG GGGHVDQIDS GREMWTNMNY INSGALM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)