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AT5G60170.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : RNA binding (RRM/RBD/RNP motifs) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RNA binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), RNA recognition, domain 1 (InterPro:IPR003954); BEST Arabidopsis thaliana protein match is: RNA binding (RRM/RBD/RNP motifs) family protein (TAIR:AT3G45630.1); Has 1342 Blast hits to 828 proteins in 247 species: Archae - 0; Bacteria - 318; Metazoa - 242; Fungi - 228; Plants - 152; Viruses - 0; Other Eukaryotes - 402 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5175eggNOG:KOG2068EMBL:CP002688EnsemblPlants:AT5G60170EnsemblPlants:AT5G60170.1entrez:836139ExpressionAtlas:F4JXH8
Gene3D:3.30.40.10Gene3D:3.30.70.330GeneID:836139GO:GO:0000166GO:GO:0003676GO:GO:0008270Gramene:AT5G60170.1
hmmpanther:PTHR12603hmmpanther:PTHR12603:SF3InterPro:IPR000504InterPro:IPR001841InterPro:IPR003954InterPro:IPR012677InterPro:IPR013083
PaxDb:F4JXH8Pfam:PF00076Pfam:PF14570Pfscan:PS50089Pfscan:PS50102PRIDE:F4JXH8PROSITE:PS50089
PROSITE:PS50102ProteinModelPortal:F4JXH8Proteomes:UP000006548RefSeq:NP_200825.2SMART:SM00361SMR:F4JXH8STRING:3702.AT5G60170.2
SUPFAM:SSF54928SUPFAM:SSF57850TAIR:AT5G60170UniGene:At.29180UniProt:F4JXH8
Coordinates (TAIR10) chr5:+:24228178..24232394
Molecular Weight (calculated) 108015.00 Da
IEP (calculated) 6.26
GRAVY (calculated) -0.58
Length 985 amino acids
Sequence (TAIR10)
(BLAST)
001: MSDHGEKTCP LCAEEMDLTD QQLKPCKCGY QICVWCWHHI VDMAEKDQIE GRCPACRTPY DKEKIVGMTV NCDSLASEGN MERKKIQKSK SKSSEGRKQQ
101: LTSVRVIQRN LVYIVGLPLN LADEDLLQHK EYFGQYGKVL KVSMSRTASG VIQQFPNNTC SVYITYGKEE EAVRCIQAVH GFILDGKPLK ACFGTTKYCH
201: AWLRNVACVN PDCLYLHEVG SQDDSFTKDE IISAYTRVQQ ITGATNILQH HSGNMLPPPL DAYCSDSSSA KPIIKVPSTN ATSVPRYSPP SGSGSSSRST
301: ALPAAASWGT HQSLATSVTS NGSSDIQRST SVNGTLPFSA VVANAAHGPV SSNDILKRPS RKEESQIVMD KVKPSVLKPL QHNVVVSGSE RITAPDRDPT
401: SNRLSSSVDS AYGGRDIDQP SAYSGRDIDK PSSTVSSFDA ANEAVEDVPT VSNLLDGVAC MRITMNCRDE RPDITMAIGS QSDQGSIRQP GSEVSKLPDL
501: EQCRIDSSIN TDKKAISLED RIPRTRPGWD WISDLQSQMQ GSSKLQVEDI STLDSQRPHP EEDIIHSRLL SNLSSSSLDT NHMASRSSLP CEVRGSDRLH
601: LPNGFGEKSM SSVEHSLFAN EGRNKVNNAE DAILSNILSL DFDPWDESLT SPHNLAELLG EVDQRSSTLK PSNFLKQHNN QSRFSFARYE ESSNQAYDSE
701: NYSIYGQLSR DKPIQESAMS RDIYRNNLGS VNGFASNFAG GLDNFAASPL FSSHKNPVSR PQVSAPPGFS APNRLPPPGF SSHERVGLSS DTTLGNRFLD
801: STSLRNAYQV PPPVGNSNGA SDIDFVDPAI LAVGRGMVNA DLDMRSGFSS QLNSFENETG LHMLRQQSLS SAQQVNGFHH DLRNLSPSLN DPYGFSSRLM
901: DQTQGSSLSP FSQLPRQQPS ANSILSNGHH WDKWNEGQSV NNIGMAELLR NERLGFNGSL YNNGYEEPKF RIPSPGDVYN RTYGI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)