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AT5G60140.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : AP2/B3-like transcriptional factor family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
AP2/B3-like transcriptional factor family protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: AP2/B3-like transcriptional factor family protein (TAIR:AT5G60130.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JP1WeggNOG:ENOG41119B4EMBL:AB019231EMBL:AB026632
EMBL:AB493802EMBL:CP002688EnsemblPlants:AT5G60140EnsemblPlants:AT5G60140.1
entrez:836136Gene3D:2.40.330.10GeneID:836136Genevisible:Q9FHB0
GO:GO:0003677GO:GO:0005634GO:GO:0006351GO:GO:0006355
Gramene:AT5G60140.1hmmpanther:PTHR31920HOGENOM:HOG000097080InParanoid:Q9FHB0
InterPro:IPR003340InterPro:IPR015300KEGG:ath:AT5G60140OMA:ICELKRT
PaxDb:Q9FHB0Pfam:PF02362Pfam:Q9FHB0Pfscan:PS50863
PhylomeDB:Q9FHB0PRIDE:Q9FHB0PRO:PR:Q9FHB0PROSITE:PS50863
ProteinModelPortal:Q9FHB0Proteomes:UP000006548RefSeq:NP_200822.1SMART:SM01019
SMR:Q9FHB0STRING:3702.AT5G60140.1SUPFAM:SSF101936TAIR:AT5G60140
UniGene:At.29182UniProt:Q9FHB0
Coordinates (TAIR10) chr5:-:24214077..24215351
Molecular Weight (calculated) 37085.60 Da
IEP (calculated) 4.16
GRAVY (calculated) -0.77
Length 328 amino acids
Sequence (TAIR10)
(BLAST)
001: MNTRGNYSNG FTSKFFKPYL PSESGDDLVL PISFNSCLPK SLPKTVTVRS ISGNIWKLGF KKCGGEVERF VMVSGWKKIV RDENLNGGDL LSFEFDGSHF
101: FNFSIFDHET TCKRLKRSSE QSKDIIKVGS DCEEESQASD DVIVLNSDDS DDSDNDYSVE DDNVAEDDDG LEDEVDVEAE DGYDAKDSDG LEDEDDDEAE
201: DGYDAKDDDG LEDEDDLEDE DDERRYLDDH ENPYFTMTLN PKKKSQLHIP AHVIRDYDLT FPERITVVDE MGALEKAIKI QKNGCIFVKG FGSFIRRNKM
301: KMTDKMICEL KRTGGNLVHT IKVKIISG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)