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AT5G60100.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : pseudo-response regulator 3
Curator
Summary (TAIR10)
Encodes pseudo-response regulator 3 (APRR3/PRR3). PRR3 transcript levels vary in a circadian pattern with peak expression at dusk under long and short day conditions. PRR3 affects the period of the circadian clock and seedlings with reduced levels of PRR3 have shorter periods, based on transcriptional assays of clock-regulated genes. PRR3 is expressed in the vasculature of cotyledons and leaves where it may help stabilize the TOC1 protein by preventing interactions between TOC1 and the F-box protein ZTL.
Computational
Description (TAIR10)
pseudo-response regulator 3 (PRR3); CONTAINS InterPro DOMAIN/s: CheY-like (InterPro:IPR011006), Signal transduction response regulator, receiver domain (InterPro:IPR001789), CCT domain (InterPro:IPR010402); BEST Arabidopsis thaliana protein match is: pseudo-response regulator 7 (TAIR:AT5G02810.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:21376EMBL:AB019231EMBL:AB046956EMBL:AB493801EMBL:CP002688EMBL:DQ060154EMBL:DQ060155
EnsemblPlants:AT5G60100EnsemblPlants:AT5G60100.1EnsemblPlants:AT5G60100.3entrez:836132ExpressionAtlas:Q9LVG4GeneID:836132Genevisible:Q9LVG4
GO:GO:0000160GO:GO:0005634GO:GO:0006351GO:GO:0006355GO:GO:0048511hmmpanther:PTHR26402hmmpanther:PTHR26402:SF543
HOGENOM:HOG000034018InParanoid:Q9LVG4IntAct:Q9LVG4InterPro:IPR001789InterPro:IPR010402InterPro:IPR011006iPTMnet:Q9LVG4
KEGG:ath:AT5G60100KO:K12131Pfam:PF00072Pfam:PF06203Pfam:Q9LVG4Pfscan:PS50110Pfscan:PS51017
PhylomeDB:Q9LVG4PRIDE:Q9LVG4PRO:PR:Q9LVG4PROSITE:PS50110PROSITE:PS51017ProteinModelPortal:Q9LVG4Proteomes:UP000006548
RefSeq:NP_001190574.1RefSeq:NP_568919.1SMART:SM00448SMR:Q9LVG4SUPFAM:SSF52172TAIR:AT5G60100tair10-symbols:APRR3
tair10-symbols:PRR3UniGene:At.1676UniProt:Q9LVG4
Coordinates (TAIR10) chr5:-:24198215..24200502
Molecular Weight (calculated) 55289.10 Da
IEP (calculated) 7.62
GRAVY (calculated) -0.98
Length 495 amino acids
Sequence (TAIR10)
(BLAST)
001: MCFNNIETGD EVETERQVFG SSEEDEFRVE DTARNTNNVQ ISQQQQQPLA HVVKWERYLP VRSLKVLLVE NDDSTRHIVT ALLKNCSYEV TAVPDVLEAW
101: RILEDEKSCI DLVLTEVDMP VHSGTGLLSK IMSHKTLKNI PVIMMSSHDS MVLVFKCLSN GAVDFLVKPI RKNELKNLWQ HVWRRCHSSS GSGSESGIHD
201: KKSVKPESTQ GSENDASISD EHRNESGSSG GLSNQDGGSD NGSGTQSSWT KRASDTKSTS PSNQFPDAPN KKGTYENGCA HVNRLKEAED QKEQIGTGSQ
301: TGMSMSKKAE EPGDLEKNAK YSVQALERNN DDTLNRSSGN SQVESKAPSS NREDLQSLEQ TLKKTREDRD YKVGDRSVLR HSNLSAFSKY NNGATSAKKA
401: PEENVESCSP HDSPIAKLLG SSSSSDNPLK QQSSGSDRWA QREAALMKFR LKRKERCFEK KVRYHSRKKL AEQRPHVKGQ FIRKRDDHKS GSEDN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)