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AT5G60030.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G75335.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J7HVeggNOG:ENOG410ZGPSEMBL:AB019231EMBL:CP002688EnsemblPlants:AT5G60030EnsemblPlants:AT5G60030.1entrez:836125
GeneID:836125Gramene:AT5G60030.1hmmpanther:PTHR33833hmmpanther:PTHR33833:SF1KEGG:ath:AT5G60030ncoils:CoilOMA:DHEASHA
Proteomes:UP000006548RefSeq:NP_200811.1STRING:3702.AT5G60030.1TAIR:AT5G60030UniGene:At.47213UniProt:Q9LVH1
Coordinates (TAIR10) chr5:-:24172082..24172960
Molecular Weight (calculated) 34156.70 Da
IEP (calculated) 10.08
GRAVY (calculated) -1.84
Length 292 amino acids
Sequence (TAIR10)
(BLAST)
001: MKTVTGRVVS AEPISLSKAA KLLSGFASSD NGASQDVSAY LRRASAAFTE LKSFHREIKS KETKPSSDRE TKSTETKQSS DAKSERNVID EFDGRKIRYR
101: NSEAVSVESV YGRERDEKKM KKSKDADVVD EKVNEKLEAE QRSEERRERK KEKKKKKNNK DEDVVDEKVK EKLEDEQKSA DRKERKKKKS KKNNDEDVVD
201: EKEKLEDEQK SAEIKEKKKN KDEDVVDEKE KEKLEDEQRS GERKKEKKKK RKSDEEIVSE ERKSKKKRKS DEEMGSEERK SKKKRKLKEI DD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)