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AT5G59990.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : CCT motif family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
CCT motif family protein; CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402); BEST Arabidopsis thaliana protein match is: CCT motif family protein (TAIR:AT5G41380.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IZDPeggNOG:ENOG410YZD0EMBL:AB015475EMBL:AY924872
EMBL:CP002688EnsemblPlants:AT5G59990EnsemblPlants:AT5G59990.1entrez:836121
ExpressionAtlas:Q9FJD8GeneID:836121Gramene:AT5G59990.1hmmpanther:PTHR31319
hmmpanther:PTHR31319:SF1HOGENOM:HOG000064609InterPro:IPR010402OMA:EGMSKAY
Pfam:PF06203Pfscan:PS51017PhylomeDB:Q9FJD8PROSITE:PS51017
Proteomes:UP000006548RefSeq:NP_200807.1TAIR:AT5G59990UniGene:At.55631
UniProt:Q9FJD8
Coordinates (TAIR10) chr5:-:24151206..24153084
Molecular Weight (calculated) 26593.80 Da
IEP (calculated) 6.51
GRAVY (calculated) -0.63
Length 241 amino acids
Sequence (TAIR10)
(BLAST)
001: MCGHVSTSIT SGDNCPCFLY SDDIVAPPQL LDHHHHQFPP PPLALLMMSQ NSLYAAEAVS GFGYFDSGMN GGGGSSSCDS PSSMGSGGES LVMQRSVSSH
101: NGFSGNYTAA HDFVNDDDGP VRRALSAGDL PRSSRRESST VWSESNAIIE GMSKAYKYSP EEKKEKIEKY RSKRNLRNFN KRIKYECRKT LADSRPRIRG
201: RFARNDEISQ QEQVDVMEAV VGDVDTWASF LDSFSANHFL N
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)