AT5G59930.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:plasma membrane 0.949 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Cysteine/Histidine-rich C1 domain family protein | ||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
Cysteine/Histidine-rich C1 domain family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: intracellular signaling pathway; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Protein kinase C-like, phorbol ester/diacylglycerol binding (InterPro:IPR002219), DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, ZZ-type (InterPro:IPR000433), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT5G59940.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr5:+:24134526..24136496 | ||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 74891.60 Da | ||||||||||||||||||||||||||||||||||||
IEP (calculated) | 7.21 | ||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.10 | ||||||||||||||||||||||||||||||||||||
Length | 656 amino acids | ||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MDTSAVQLPF RDYSLQPAPR YINARCHICS VTGAIYNGYF CNDPIVWMHK ECVELPSEIN HLFHPQHPLL LTYEEGWWSC FCALCGETKP AKYFYSCSTC 101: KIKVDLTCGM NPPPPAIEHP ICHDHPLVFL KKRQEKTPCE VCKNRILGSS YSCLGCELYF HVGCIHLSKE VNHPCHSDHP LMLVESESLT DNDKKTCFLC 201: GQQPHGILYH CSICNFTLCI GCIKSPPPLV VENVKTHKHP LTFFPRGVYC TCNVCGVKGL ILSYMCLQCG FAVHCSCVDL PQVININRHD HRISFTQHLG 301: PGYLNCGVCR RSVCQFNGAY SCLVCPNYAV HSRCATRYDI WDGVELEGKA ENIEDIAPFK VVGDDLIRHF SHSKHSLRLH KNNIIYDDST RCEACGHPVE 401: FGRIYNCEEC CFILHEKCAN LPMKKRLVFS TLPFLLLGPG NDVCKVLDCK LCGMFFTGFE YKSQERRQSD IDVHCGSLTE PFVHDGHLHP LYFDQKQKEL 501: PCNACQKTIR DYMLCCADCD FNLCLWCASL PKKIRHSNDE HILTLCCGEE ANGKYWCDIC EAELDPSKWF YTCFGCGGTL HVECVLGDFS RLMPGCTIDY 601: RVYTVEVVFN NHNTRPMCSR CHSRCKVSVI LKFREGNIVY FFCSRSCFLM HFSYYL |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)