suba logo
AT5G59880.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:22215637 (2012): plasma membrane
  • PMID:21166475 (2011): cytosol
  • PMID:19334764 (2009): plasma membrane
  • PMID:17644812 (2007): plasma membrane
  • PMID:14671022 (2004): mitochondrion
  • PMID:12492832 (2002): mitochondrion
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : actin depolymerizing factor 3
Curator
Summary (TAIR10)
Encodes actin depolymerizing factor 3 (ADF3).
Computational
Description (TAIR10)
actin depolymerizing factor 3 (ADF3); FUNCTIONS IN: actin binding; INVOLVED IN: response to oxidative stress, response to cadmium ion; LOCATED IN: mitochondrion, intracellular, chloroplast, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Actin-binding, cofilin/tropomyosin type (InterPro:IPR002108); BEST Arabidopsis thaliana protein match is: actin depolymerizing factor 1 (TAIR:AT3G46010.1); Has 1432 Blast hits to 1431 proteins in 264 species: Archae - 0; Bacteria - 5; Metazoa - 599; Fungi - 151; Plants - 515; Viruses - 0; Other Eukaryotes - 162 (source: NCBI BLink).
Protein Annotations
BioGrid:21354eggNOG:ENOG41122P5eggNOG:KOG1735EMBL:AB015475EMBL:AF102821EMBL:AF360169EMBL:AY050334
EMBL:AY056345EMBL:AY086069EMBL:AY094033EMBL:CP002688EnsemblPlants:AT5G59880EnsemblPlants:AT5G59880.1entrez:836110
ExpressionAtlas:Q9ZSK4Gene3D:3.40.20.10GeneID:836110Genevisible:Q9ZSK4GO:GO:0005739GO:GO:0005829GO:GO:0005886
GO:GO:0006979GO:GO:0009506GO:GO:0009507GO:GO:0015629GO:GO:0030042GO:GO:0046686hmmpanther:PTHR11913
hmmpanther:PTHR11913:SF22HOGENOM:HOG000039697InParanoid:Q9ZSK4IntAct:Q9ZSK4InterPro:IPR002108InterPro:IPR017904InterPro:IPR029006
iPTMnet:Q9ZSK4OMA:RIENYEEPANTHER:PTHR11913PaxDb:Q9ZSK4Pfam:PF00241Pfam:Q9ZSK4Pfscan:PS51263
PhylomeDB:Q9ZSK4PRIDE:Q9ZSK4PRO:PR:Q9ZSK4PROSITE:PS51263ProteinModelPortal:Q9ZSK4Proteomes:UP000006548RefSeq:NP_851227.1
SMART:SM00102SMR:Q9ZSK4STRING:3702.AT5G59880.1SUPFAM:SSF55753SwissPalm:Q9ZSK4TAIR:AT5G59880tair10-symbols:ADF3
UniGene:At.24339UniProt:Q9ZSK4
Coordinates (TAIR10) chr5:+:24120382..24121628
Molecular Weight (calculated) 15923.00 Da
IEP (calculated) 6.27
GRAVY (calculated) -0.42
Length 139 amino acids
Sequence (TAIR10)
(BLAST)
001: MANAASGMAV HDDCKLKFME LKTKRTHRFI IYKIEELQKQ VIVEKIGEPG QTHEDLAASL PADECRYAIF DFDFVSSEGV PRSRIFFVAW SPDTARVRSK
101: MIYASSKDRF KRELDGIQVE LQATDPTEMD LDVFKSRAN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)