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AT5G59850.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31871212 (2020): mitochondrion
  • PMID:31520498 (2020): mitochondrion
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:23323832 (2013): plasma membrane
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
  • PMID:21533090 (2011): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ribosomal protein S8 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ribosomal protein S8 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, cell wall, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S8 (InterPro:IPR000630); BEST Arabidopsis thaliana protein match is: ribosomal protein S15A (TAIR:AT1G07770.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0096eggNOG:KOG1754EMBL:AK317713EnsemblPlants:AT1G07770.1
EnsemblPlants:AT1G07770.2EnsemblPlants:AT5G59850EnsemblPlants:AT5G59850.1entrez:836107
entrez:837291ExpressionAtlas:B9DI04GeneID:836107GeneID:837291
GO:GO:0003735GO:GO:0005840GO:GO:0006412Gramene:AT1G07770.1
Gramene:AT1G07770.2Gramene:AT5G59850.1HAMAP:MF_01302_Ahmmpanther:PTHR11758
hmmpanther:PTHR11758:SF16InterPro:IPR000630KEGG:ath:AT1G07770KEGG:ath:AT5G59850
KO:K02957OMA:THEVTPAPANTHER:PTHR11758PaxDb:B9DI04
Pfam:P42798Pfam:PF00410PhylomeDB:B9DI04PRIDE:B9DI04
PROSITE:PS00053ProteinModelPortal:B9DI04RefSeq:NP_172256.1RefSeq:NP_200793.1
RefSeq:NP_973783.1scanprosite:PS00053SMR:B9DI04STRING:3702.AT5G59850.1
SUPFAM:SSF56047TAIR:AT1G07770TAIR:AT5G59850UniGene:At.21259
UniGene:At.23585UniGene:At.57582UniGene:At.6667UniProt:B9DI04
UniProt:P42798
Coordinates (TAIR10) chr5:-:24112499..24113084
Molecular Weight (calculated) 14805.30 Da
IEP (calculated) 10.46
GRAVY (calculated) -0.16
Length 130 amino acids
Sequence (TAIR10)
(BLAST)
001: MVRISVLNDA LKSMYNAEKR GKRQVMIRPS SKVIIKFLIV MQKHGYIGEF EYVDDHRSGK IVVELNGRLN KCGVISPRFD VGVKEIEGWT ARLLPSRQFG
101: YIVLTTSAGI MDHEEARRKN VGGKVLGFFY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)