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AT5G59610.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Chaperone DnaJ-domain superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Chaperone DnaJ-domain superfamily protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095); BEST Arabidopsis thaliana protein match is: Molecular chaperone Hsp40/DnaJ family protein (TAIR:AT4G39960.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0484eggNOG:KOG0714EMBL:AB006705EMBL:BT030000EMBL:CP002688EnsemblPlants:AT5G59610EnsemblPlants:AT5G59610.1
entrez:836080ExpressionAtlas:Q9FNA0Gene3D:1.10.287.110GeneID:836080GO:GO:0009507Gramene:AT5G59610.1hmmpanther:PTHR24078
HOGENOM:HOG000240521InterPro:IPR001623ncoils:CoilOMA:LRDVQITPfam:PF00226Pfscan:PS50076PhylomeDB:Q9FNA0
PRINTS:PR00625PROSITE:PS50076Proteomes:UP000006548RefSeq:NP_200769.1SMART:SM00271SMR:Q9FNA0STRING:3702.AT5G59610.1
SUPFAM:SSF46565TAIR:AT5G59610UniGene:At.29215UniProt:Q9FNA0
Coordinates (TAIR10) chr5:+:24013165..24014954
Molecular Weight (calculated) 30266.00 Da
IEP (calculated) 6.54
GRAVY (calculated) -0.81
Length 268 amino acids
Sequence (TAIR10)
(BLAST)
001: MYATSSILSP TPQSFFLSHH LPPISFLYRI NFLGFPVTSC CYGGDIGLAS LYKRRSSIQR RRNRIFVTRA RSSPYEILGV SPSATPQDIK RAYRKLALKY
101: HPDVNKEANA QEKFLKIKHA YTTLINSDSR RKYGSDSRAT GSSTGQTSRK GNSQVEEDFY GLGDFFKDLQ EEYKNWEASA SSQGKPKSLW EELSEIGEEF
201: VEFLEKELNI SDEDNEGSSK NGERFDFEEG STEKSSGKNN SSTKNSIEDN IDEIEATLAQ LKKDLGLQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)